Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122235g00001 ATGGCAGGTTTGTTCTCACTAGGAGGTAGTAGTAGTAGCAGTGCTGGAAGAGGAGGAGGGAGAGGGAACACAAACCAACAAGACCAACACCAACAACACACGGAAATTCCTCCCTCCGACACCTTTTACTGGTACAAGAATGAAGACGTTTCCTCGTACCGAGGCTTCGAGCTCTGGAACCAACACCACCAGCATCATCATCAACCGCCGGAACATGACCTCATACCCCAAGCAAGGCCACTCTTCCACCAGGATCTTTACAGCTCCGCGGCTGCTCTAGGCGTCGGTCCAACCACCGTCTCCGACGATCAGTCACCCTCGAGATCGGCGTTCCTGGTCACGGCGTCGGCCGTCGCAAGCGGAGGAACAAGCGGAGGAGCAGGAGGAGGGATTAGCTGCCAGGACTGCGGGAACCAGGCCAAGAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCGTGGGTTCGATTGCCAAACCCATGTGAAGAGCACTTGGGTTCCCGCTTCGAAGCGCCGCGAGAGGCAGCAGCAACTTGCCGCTATGCAACAGCAACAGCTTCATGGCGGTGATGTTCCCAAGAGGCAAAGAGATCATGGCACTAGTATTACTCGTTTGCCCACAAACCCTTCTCCTTCAGGCTCAGCTTCAGGTAGGATGGAGAATTTTCCAGCAGTGGTGAGCTCTCCAGCAGAATTCAGATGCGTACGTGTGAGCGGAATAGACGACACAGAAGACGAGTATGCATATCAAACGGCTGTCAACATTGGAGGACACCTCTTCAAAGGGATACTCTATGACCAGGGTCCAGATCATGCCACCACAACCGCCACTAACAGCAGCAGCTACGTCGCCGGAGACACCTCCTCCACCGGCGCTGCTGCTGCTCATCACCCTAACCTCAACCTCATTGTTCCAACCACAACTTCACCCCTTGTCTCCGGCGCACACGCAACAACGCAGCAGCAGCACCTCGTTGATCCTTCATCCATGTATCCACCTCCTCCTCCTCTCAACACCTTCATGGCTGGTAGTAGCGGTACGCAATTCTTCCCTCATCCAAGATCTTGA 1077 0.5497 MAGLFSLGGSSSSSAGRGGGRGNTNQQDQHQQHTEIPPSDTFYWYKNEDVSSYRGFELWNQHHQHHHQPPEHDLIPQARPLFHQDLYSSAAALGVGPTTVSDDQSPSRSAFLVTASAVASGGTSGGAGGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLAAMQQQQLHGGDVPKRQRDHGTSITRLPTNPSPSGSASGRMENFPAVVSSPAEFRCVRVSGIDDTEDEYAYQTAVNIGGHLFKGILYDQGPDHATTTATNSSSYVAGDTSSTGAAAAHHPNLNLIVPTTTSPLVSGAHATTQQQHLVDPSSMYPPPPPLNTFMAGSSGTQFFPHPRS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122235g00001 358 NCBIfam putative zinc finger domain, LRP1 type 132 174 IPR006510 -
Stsc122235g00001 358 MobiDBLite consensus disorder prediction 204 220 - -
Stsc122235g00001 358 Pfam Domain of unknown function (DUF702) 130 273 - -
Stsc122235g00001 358 MobiDBLite consensus disorder prediction 1 38 - -
Stsc122235g00001 358 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 341 IPR007818 GO:0003700|GO:0006355
Stsc122235g00001 358 MobiDBLite consensus disorder prediction 171 221 - -
Stsc122235g00001 358 MobiDBLite consensus disorder prediction 1 41 - -
Stsc122235g00001 358 NCBIfam LRP1 C-terminal domain 225 272 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122235g00001 Stsc-Chr122235 6201 8914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122235g00001 1 346 C2H2 Transcription Factor Family AT5G66350 44.324 3.78e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc122235g00001 DUF702 7.9e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122235g00001 - - ahf:112720334 342.813