Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122229g00001 ATGAATATTCATAATCATCACTCGGACGATGAAGTGATTCTAGCTTCGTCGATGCCGAAGAAGAGAGCGGGGAGGAGGGTGTTCAAGGAGACAAGGCACCCAGTGTACAGGGGAGTGCGGAGGAGGAACAACAACAAGTGGGTTTGCGAGATTCGTGTTCCCAACAATGCTAACAACACAAGGATATGGCTTGGAACATATCCTACACCTGAAATGGCAGCACGTGCACACGATGTTGCTGCTCTTGCGCTCCGCGGCAAGTCCGCCTGCCTCAACTTCTCCGACTCTGCTTCGCGCTTGCAACTTCCGCCTTCCACCGACCCGGAGGAAATTAGGAGGGCCGCTGTTGAGGCTGCGGCGGCGTTTGCGGAGGAAGGCAGCACCCTGCAGGAGGAGCAGCAGCAGAGTGTTGGGGAGTGCATGGTAGTGACTGAAGAGGATGAGAAGAAGGGTGGTGTTGATGAGCGAGATATATTTGAGGTTAGTGTTCCGGCGGTTTCTGAAGAAAGTGAGGATTGGTATGATTTGGTTATGAGCATGGCGGATGAGCCTCTAAGGTCTCCTCCTCATCCTTTTGCGAGAGATGGAAGTAGTAGGGACTTTACTGACGTGGAGATATTCGATGTTGGGCTGCCACTATGGAGTTTCTCAATTTGA 657 0.5221 MNIHNHHSDDEVILASSMPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEIRVPNNANNTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFSDSASRLQLPPSTDPEEIRRAAVEAAAAFAEEGSTLQEEQQQSVGECMVVTEEDEKKGGVDERDIFEVSVPAVSEESEDWYDLVMSMADEPLRSPPHPFARDGSSRDFTDVEIFDVGLPLWSFSI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122229g00001 218 Pfam AP2 domain 34 86 IPR001471 GO:0003700|GO:0006355
Stsc122229g00001 218 PIRSF PTI6 1 116 IPR017392 GO:0003700
Stsc122229g00001 218 PIRSF PTI6 112 212 IPR017392 GO:0003700
Stsc122229g00001 218 FunFam Ethylene-responsive transcription factor 2 34 95 - -
Stsc122229g00001 218 SUPERFAMILY DNA-binding domain 35 96 IPR016177 GO:0003677
Stsc122229g00001 218 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Stsc122229g00001 218 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Stsc122229g00001 218 ProSiteProfiles AP2/ERF domain profile. 35 94 IPR001471 GO:0003700|GO:0006355
Stsc122229g00001 218 CDD AP2 36 96 IPR001471 GO:0003700|GO:0006355
Stsc122229g00001 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 215 IPR045277 GO:0003700
Stsc122229g00001 218 Gene3D AP2/ERF domain 35 95 IPR036955 GO:0003700|GO:0006355
Stsc122229g00001 218 SMART rav1_2 35 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122229g00001 Stsc-Chr122229 1983 3091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122229g00001 8 216 AP2-EREBP Transcription Factor Family AT1G12610 48.131 5.59e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc122229g00001 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122229g00001 - - gmx:100789097 223.016