Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122218g00002 ATGGGAATGGGAAATGAATTTGGTTGTGGCTTCATTGGTGGAATTATCCAACTCAAAAGCTATTGGCTGAGAAAATCTTCAGTTCATTCACTTCCCATGAAAGCCAGAAACAACAAAGAAGAAGAAACATTGGCTCTAAGAAGAAGAAACTCCACTGACACTGTAATAATCACACAAAAGCTGAGTATCTCAGACCAAAAGCCGTCCAGAAAAAGCACTTCTTCAGTGCCTCAAAATAGAAGACTTTCGGTTTCAGATGCTGCAAGAATCTCAACATCAACATCTGCATCAACGTCGACGTTATCAAATGATGACAGCAAGCTGCAGAAGAACACTCTGCAGCTCGCCGAGATAAACAGCAAGTTTTCGGCCAGCACAAAACTGGCCGGGAACTTGCTTGTAAACAACAACATTCCAAGAACAAAGAGCCTCTTGGAATGTGATTCAAAGTGCAAAACAGAGTGGAACTCTTTGTCCGGTTCGTATACCAGTGCCGGAAAACCTTTGATGGGGAACATTGTGAGGAAGAACAGCGGCGGCGACCGTGATGAATTTGCGAGGAAAAAGAGGGTGGTGGAGCCTGAGGTGTTGAAGAAGATGGGAAACGATGCGTATAAGAGAGGAAGGTTTGAAGAGGCTGTGGGTTTGTATGACAGAGCAATTGCTTTGGATTCAAGGAAGGCAACTTATCATTGCAACAAGAGTGCTGCCTTGATTGGATTAGGAAGGTTTCAAGAAGCAGTTGTTGAATGTGAGGAATCTGTTAGGTTGGAGCCTTCCTATACCAGAGCTCATAACCGTTTGGCAACCATATATTTCAGATTGGGAGAAGCAGAGAAAGCCCTGGATTGCAATAAGTTAACCCAAGATGCTGATTCTGAACTGGCTTTCCAAGTTAAGGCACTTCAGAATCACCTTAACAAGTGCAATGAAGCTCGGAAATATAATGAATGGGATGTTGTAGTGAGGGAGACACACTCAGCAATATCCTTAGGGGCTGATTCATCTCCACAGGTCTATGCTTTGCAAACTGAAGCCTTGTTGAAGCAGCTAAGATATCAAGAGGCAAAAGGCAGCTATGAGAAAATGCCAAAATTCTCGCCTGATTGGTGTAACAAGATATTTGGCTTTGCTCGTAGCTCCTACCACTTCATGATCGGCGCACAGGTTTACTTGGCAGCTGGCAGGTTTGAGGATGCCGTTGAGGCAGCTCAGAAAGCAGCTAACATTGATCCAAGCAACAGTGAGGCAAATGCAATGTTAAGGAAGGCCAGGGCAGTAACATCAGCCAGAATGAGTGGAAACTTGCTCTTCAAGGCATCTAAGTTTGCGGAAGCGTGCGCGGTGTACAATGAAGGACTCGACCACGATCCTAACAACTCAGTCTTGCTATGCAATCGAGCAGCGTGTCGTTCCAAGCTTGGCCAATACGAGAAAGCGATCGAAGATTGCAATGCTGCGCTAAGAGTCCAGCCGTCCTACAGCAAAGCAAGGTTAAGGAGAGCAGATTGCAATGCCAAGTTGGAAAGATGGGAAGCTGCAATTGAAGACTATGAAATGCTATTAAGAGAGAAGCCAGGGGATGAGGAAGTAGGCAGGGCATTATTTGAGGCCCAGCTACAACTCAAGATGCTTCGTGGAGAAGATATTAAAAACTTGAAATTTGGTGCCAATTTGGTGTTCATTTCAAGCAATGATCGATTCAGACATTATGTAACTTCACCTGGAATGGCTGTGGTGCTATTTACCAACAAGGCAGCACAAAAACAAGCACTTCTAGTATTGGAGCAAATTAGCAAGAGATTCCCATCAGTAAATTTCCTCAAGGTGGAGATTGAGGACCATCCTTACTTGGCTAAATCAGAAGGTGTGAGCTCTATTCCAGCTTTCAAAATATACAAGAATGGATCAAGGGTCAAAGAAATTTCTGGAAAACACCATGATTTATTAGAAAAATCAGTTCAATTGTATAGCAGCTGA 1980 0.4384 MGMGNEFGCGFIGGIIQLKSYWLRKSSVHSLPMKARNNKEEETLALRRRNSTDTVIITQKLSISDQKPSRKSTSSVPQNRRLSVSDAARISTSTSASTSTLSNDDSKLQKNTLQLAEINSKFSASTKLAGNLLVNNNIPRTKSLLECDSKCKTEWNSLSGSYTSAGKPLMGNIVRKNSGGDRDEFARKKRVVEPEVLKKMGNDAYKRGRFEEAVGLYDRAIALDSRKATYHCNKSAALIGLGRFQEAVVECEESVRLEPSYTRAHNRLATIYFRLGEAEKALDCNKLTQDADSELAFQVKALQNHLNKCNEARKYNEWDVVVRETHSAISLGADSSPQVYALQTEALLKQLRYQEAKGSYEKMPKFSPDWCNKIFGFARSSYHFMIGAQVYLAAGRFEDAVEAAQKAANIDPSNSEANAMLRKARAVTSARMSGNLLFKASKFAEACAVYNEGLDHDPNNSVLLCNRAACRSKLGQYEKAIEDCNAALRVQPSYSKARLRRADCNAKLERWEAAIEDYEMLLREKPGDEEVGRALFEAQLQLKMLRGEDIKNLKFGANLVFISSNDRFRHYVTSPGMAVVLFTNKAAQKQALLVLEQISKRFPSVNFLKVEIEDHPYLAKSEGVSSIPAFKIYKNGSRVKEISGKHHDLLEKSVQLYSS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122218g00002 659 ProSiteProfiles TPR repeat profile. 194 227 IPR019734 GO:0005515
Stsc122218g00002 659 ProSiteProfiles TPR repeat profile. 381 414 IPR019734 GO:0005515
Stsc122218g00002 659 SUPERFAMILY TPR-like 194 417 IPR011990 GO:0005515
Stsc122218g00002 659 CDD TRX_family 568 644 - -
Stsc122218g00002 659 Coils Coil 501 521 - -
Stsc122218g00002 659 Gene3D Glutaredoxin 554 658 - -
Stsc122218g00002 659 SUPERFAMILY TPR-like 432 543 IPR011990 GO:0005515
Stsc122218g00002 659 SMART tpr_5 228 261 IPR019734 GO:0005515
Stsc122218g00002 659 SMART tpr_5 380 414 IPR019734 GO:0005515
Stsc122218g00002 659 SMART tpr_5 262 295 IPR019734 GO:0005515
Stsc122218g00002 659 SMART tpr_5 194 227 IPR019734 GO:0005515
Stsc122218g00002 659 SMART tpr_5 461 494 IPR019734 GO:0005515
Stsc122218g00002 659 SMART tpr_5 427 460 IPR019734 GO:0005515
Stsc122218g00002 659 SMART tpr_5 495 528 IPR019734 GO:0005515
Stsc122218g00002 659 Pfam Tetratricopeptide repeat 463 494 IPR001440 GO:0005515
Stsc122218g00002 659 Pfam Thioredoxin 594 652 IPR013766 -
Stsc122218g00002 659 Pfam Tetratricopeptide repeat 200 248 - -
Stsc122218g00002 659 Pfam Tetratricopeptide repeat 388 461 - -
Stsc122218g00002 659 ProSiteProfiles TPR repeat profile. 461 494 IPR019734 GO:0005515
Stsc122218g00002 659 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 17 655 IPR044534 -
Stsc122218g00002 659 SUPERFAMILY Thioredoxin-like 547 652 IPR036249 -
Stsc122218g00002 659 MobiDBLite consensus disorder prediction 63 106 - -
Stsc122218g00002 659 Gene3D Tetratricopeptide repeat domain 193 546 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122218g00002 Stsc-Chr122218 4673 9762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122218g00002 195 426 U-box Gene Family AT3G07370 24.254 5.82e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122218g00002 K09527 - gmx:100782846 842.802