Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122216g00002 ATGGTGAACCGGTGGTGGACCGGGTCAACGGGGTTCGGAGGCTCTTCTCCACTGAAAAAAACCGATCTCGGGTTTACCACAAACGACAACGTTTCACCAGCGGCAAATAACCACCACGAACAAAATTTTGATGAGGAAGAGAAAGACAACAGCGATGATCCAAAAGAAGGTGCCATAGAGGTGCCCACCACGCGCCGCCCAAGGGGCCGCCCTCCTGGCTCCAAGAACAAGCCGAAGCCGCCTGTCTACGTCACGCGCGACAGCCCTAACGCGCTGCACAGCCATGTGATGGAGATCACAAGTGGCACAGACATCGTGGAGGCTGTCGCGCACTTTTCAAGGCGTCGCCAGCGCGGTGTCTGTGTCCTTAGCGGCAGTGGTGCCGTACTCAACGCCACGCTTCGGCAGCCGGCGGCCCCTGGAGCCGTTGTGGCACTCCAGGGCCCGTTGGAGATTCTGTCCCTAACGGGCTCGTTTCTGCCCGGGCCAGCCCCTCCTGGGGCCACGGGCTTGACAGTCTACCTCGCCGGAGGGCAGGGACAGGTGGTTGGAGGAGGGGTGGTGGGGCCCCTAGTGGCAGCAGGGCCGGTGATGGTGATGGCGGCAACGTTTTCAAATGCGATGTATGAGAGGTTGCCGATAGAAGAGGCAGAGGAGGAGGTTCAAGGTCAGGGTGAGACGGGTGGCGGAGTGCACGGCGGTGGTTACACCGGAGAAGCATCGTCATCGGTGGCTGCAGTGTATAATAGTGTTGGTCCTCCGAGTTTGGGTGTTCCGAATGGAAAGCAATTGAACCATGAAGGTTACTCTCATCAATGGGTTCATGGTAACGGAGGAAGAACATACTGA 849 0.5866 MVNRWWTGSTGFGGSSPLKKTDLGFTTNDNVSPAANNHHEQNFDEEEKDNSDDPKEGAIEVPTTRRPRGRPPGSKNKPKPPVYVTRDSPNALHSHVMEITSGTDIVEAVAHFSRRRQRGVCVLSGSGAVLNATLRQPAAPGAVVALQGPLEILSLTGSFLPGPAPPGATGLTVYLAGGQGQVVGGGVVGPLVAAGPVMVMAATFSNAMYERLPIEEAEEEVQGQGETGGGVHGGGYTGEASSSVAAVYNSVGPPSLGVPNGKQLNHEGYSHQWVHGNGGRTY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122216g00002 282 FunFam AT-hook motif nuclear-localized protein 92 220 - -
Stsc122216g00002 282 Gene3D - 93 222 - -
Stsc122216g00002 282 MobiDBLite consensus disorder prediction 1 38 - -
Stsc122216g00002 282 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 206 IPR005175 -
Stsc122216g00002 282 ProSiteProfiles PPC domain profile profile. 89 224 IPR005175 -
Stsc122216g00002 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 232 IPR014476 GO:0003680
Stsc122216g00002 282 MobiDBLite consensus disorder prediction 1 87 - -
Stsc122216g00002 282 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 218 - -
Stsc122216g00002 282 CDD DUF296 95 176 IPR005175 -
Stsc122216g00002 282 MobiDBLite consensus disorder prediction 217 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122216g00002 Stsc-Chr122216 7117 7965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122216g00002 1 275 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 55.000 8.46e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122216g00002 - - gmx:100795097 276.559