Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122159g00002 ATGAGGTCGGGACCCTCTTTACACACATCAAGTAACCGTAAGTTGACAGAACCACCCGGAAAAACATCAGTAAAATGGGTCATAACTCGCAAGCTTGGCCCAAAAAGCCTTAAGCTCTCGAGTGGGGGCAATGTTACAGGCCAGCCCCTAGAGCCCAAATCATTAAGGAATAAGGGGGCATTACCCCCTCAAGATGAAGATGACACTGAAGATATCAAAATTGTTGAGTCATTACTATTTAACTTGGACAGTATACAAGACGCTACAAATGACTTTTCTGATGCTAATAAACTAGGACAAGGTGGATTTGGGGCTGTTTACAAGGGTTTCCTCTCTGATGGACAAGAAATTGCTGTAAAAAGGTTGGTAAAGAATCCCACCAAGAGAGCAAATTTGGACTGGGAAAGCCGCTGGAGAATCATTGAAGGTATTGCTCGAGGCATTCTTTACCTTCATGTGGACTCTCGATTGCGCATTATTCACCGTGACCTCAAAGCAGCAAATATTCTTTTAGACGAAGAAATGAATCCTAAAATATCAGATTTTGGCACAGCAAAACTGTTTGCTATAGATCAAACTCATTCTGATACAAACAGAATTGTTGGGACCTATGGTGAGAAAAGCAGTGGTGATCGTCACCGTGAGAATTCAGAGACCCTTATGAACTTTGTATGGAGAAACTGGAAGGATGGGAGAATTACAAACATTGTAGATGCCACATTAAACAATTGTTCACAGAATGAAATAATGAGATGCATCCACATTGCTTTACTATGTGTTCAAGCAAATGAAGCTGATAGACCAACAATTGATACAGTTTTACTCATGCTTAACAGTCATACAGTCCCTCTTGCAGTACCTTCAGAACCTGCATTTTTGCTGAATTCATCATGGGACTATGTTTCAATGGAAACAAGATCAAACACATCCGAAAATAGACCAGCAGCACAAGAATCAGTCAATGAAGCTTCAATTACTAAACCATATCCTCGCTAG 996 0.4066 MRSGPSLHTSSNRKLTEPPGKTSVKWVITRKLGPKSLKLSSGGNVTGQPLEPKSLRNKGALPPQDEDDTEDIKIVESLLFNLDSIQDATNDFSDANKLGQGGFGAVYKGFLSDGQEIAVKRLVKNPTKRANLDWESRWRIIEGIARGILYLHVDSRLRIIHRDLKAANILLDEEMNPKISDFGTAKLFAIDQTHSDTNRIVGTYGEKSSGDRHRENSETLMNFVWRNWKDGRITNIVDATLNNCSQNEIMRCIHIALLCVQANEADRPTIDTVLLMLNSHTVPLAVPSEPAFLLNSSWDYVSMETRSNTSENRPAAQESVNEASITKPYPR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122159g00002 331 Gene3D Transferase(Phosphotransferase) domain 1 128 206 - -
Stsc122159g00002 331 MobiDBLite consensus disorder prediction 305 324 - -
Stsc122159g00002 331 SMART serkin_6 92 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122159g00002 331 MobiDBLite consensus disorder prediction 1 18 - -
Stsc122159g00002 331 Pfam Protein kinase domain 139 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122159g00002 331 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Stsc122159g00002 331 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 213 329 - -
Stsc122159g00002 331 Gene3D Transferase(Phosphotransferase) domain 1 207 288 - -
Stsc122159g00002 331 Gene3D Transferase(Phosphotransferase) domain 1 66 127 - -
Stsc122159g00002 331 MobiDBLite consensus disorder prediction 1 67 - -
Stsc122159g00002 331 ProSiteProfiles Protein kinase domain profile. 13 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122159g00002 331 MobiDBLite consensus disorder prediction 305 331 - -
Stsc122159g00002 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Stsc122159g00002 331 FunFam Os07g0541700 protein 116 203 - -
Stsc122159g00002 331 SUPERFAMILY Protein kinase-like (PK-like) 80 311 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122159g00002 Stsc-Chr122159 5635 9915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122159g00002 62 331 Receptor kinase-like Gene Family AT4G23280 43.648 1.29e-77 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc122159g00002 Pkinase 1.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122159g00002 - - ahf:112727318 295.819