Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122145g00001 CCCGAAGCGGAAGTAATAGCCCTATCACCAAAGACACTAATGGCAACAAACAGATTCTTGTGTGACACGTGTGGGAAGGGTTTCCAAAGGGATCAAAACCTGCAACTCCATAGAAGAGGACACAACCTGCCATGGAAGCTGAAGCAAAGAACGAACAAAGAACCAAAGAAGCGCGTGTATGTGTGCCCTGAGAAAACGTGTGTCCACAACCACCCTTCAAGAGCTTTGGGAGACTTAACTGGGATCAAGAAGCACTTTTGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAATGCTCAAAGCGTTATGCAGTTCAGTCTGATTGGAAAGCACACTCCAAAACCTGCGGTACTAGAGAATACAAGTGTGATTGTGGAACCATCTTTTCTAGGTAA 399 0.4662 PEAEVIALSPKTLMATNRFLCDTCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPKKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSR 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122145g00001 132 Gene3D Classic Zinc Finger 16 117 - -
Stsc122145g00001 132 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 41 IPR013087 -
Stsc122145g00001 132 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 132 IPR031140 -
Stsc122145g00001 132 SUPERFAMILY beta-beta-alpha zinc fingers 18 115 IPR036236 -
Stsc122145g00001 132 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Stsc122145g00001 132 FunFam protein indeterminate-domain 12-like 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122145g00001 Stsc-Chr122145 3351 3751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122145g00001 1 132 IDZ Gene Family AT1G03840 92.424 7.32e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc122145g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122145g00001 K25870 - bvg:104903442 284.263