Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122117g00001 ATGGGTAACTCTCACTCACATCGCAAACACCGCAACTCCCCTTCTCAAAACCATAACTCTTCTTCTGTTGCTACTCCTTCACACTATAAATATGCTGCTGCTCATCATTATCCACAGCCACAACAACAACAACAACACAATAGTAGGACGATGATGGGCAAGGTTTCTTTGCCTTACGCGCGCGTGGACACCACGCTCCGAGGACTCGCTGCCAACGCCGAAGGCTTCGGACGCTTCGCCATCGGCGGCCTCCACGGTCCGCTTTACCATGTCACTACTCTCGCAGATGATGGACCAGGGTCACTACGCGATGCATGTCGTAAAAAAGAACCATTATGGATTTTATTTGAGGTTTCAGGCGCACTTCATCTATCATCATATTTGAATGTATCATCTTACAAGACCATTGATGGCCGGGGCCAGAGGATTAAAATCACCGGTAAAGGATTGCGGCTGAAGGAATGTGAGCATGTAATAGTGTGCAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATGTTGATGGCATTCAAATCAAGCCTAATTCAAAGCACATATGGATAGATCGTTGTACTCTCAGTGATTTCGATGATGGGCTTATAGACATCACCAGAGAAAGCACAGATATTACGATTTCAAGGTGTCATTTTTTTAATCACGACAAAACAATGCTGATTGGAGCAGATCCTTCACATGTTGGTGATAGATGCATAAGGGTCACCATTCATCATTGCTTCTTCGATGGGACTCGACAGAGGCATCCTCGTGTTCGATTTGGAAAAGTACATCTGTATAACAATTATACCAGAAACTGGGGCTTATATGCGGCTTGTGCAAGTGTGGAGTCCCAGATATACTCGCAACATAATATTTATGAAGCCGCGCAGAAGAAGGTGGCATTCAAGTACCTTTCTGAGAAGGCAGCAGATAATGGAGCAAATGCAAGTGGCCACATAATATCTGAAGGAGATTTGTTTATAAACGGAGCACAATCAGGGCTAATGGCATCTAATAATCTTGAATGTAACCATTTTCATCCTAGGGAATACTATCCCACATGGACAGTAGAACCTCCTTCAGATGATCTAAAACAGGTTCTTCAGCATTGCTCTGGATGGCAATCTATAGCGAGGCCATCGGACCAAACAGTCGAACATGGTGCTCATGGTGAACCAGTACCCATTTATTCATTCCAAACTCACAGCATGGTAGCCAGTTTACCTTATGAACGAGCTGACTCCACTCTCCGAGCACTTGCTGGCCTGGCCGAGGGATTTGGCCGCTCTGCCATTGGGGGTCTCCATGGTTCCCTTGGTCACGTCACAACTCTGGCAGATGATGGACCAGGGTCACTTCGTGACGCATGTCGTAGAAAGGATCCGTTATGGATTGTATTTCAGGTTTCAGGCACAATTCATCTGTCTTCATTTTTGAGTGTATCGTCTTATAAGACCATCGATGGCCGGGGCCGAAGGATTAAACTCACCGGAAAAGGATTACGGCTGAAGGAATGTGAGCATGTAATAGTTTGTAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATGGTGATGCCATTCAGATCAAGCCTAATTCCAAGCACATATGGATAGATCGTTGCAGCCTCAGTGATTTCGATGATGGACTCATCGACATCACCAGAGAAAGCACAGATATTACCATTTCAAGGTGTCATTTTTCTAAGCACAACAAAACAACCCTCATTGGAGCAGATCCCACGCATGTTGGTGATAGGTGCATAAGGGTCACCATCCACCACTGCTTTTTCGATGAGACTCGACAGAGGCATCCTCGTGTTAGATTTGCAAAAGTACATCTTTACAATAATTACAGCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTCTCTCAACATAATATCTATGAAGCAGGGCAGAAGAAGGTGGCATTTAAGTATCTTTCTGAAAAGGCTGCGGACAAGGGAGAGGAAGCAAGTGGCCACATAATTTCTGAAGGAGACATGTTTATAAATGGAGCACAATCAAGGCTAATGATAGATAACAACAATGGAATTAAGATTTTTCATCCAAGTGAATATTATCCCACTTGGACAGTCGAACCTCCTTCAGATAATCTAAAACAGGTTCTTCAGTACGTCACTGGATGGCAATCTATTGCTAGGCCAGAAGATTGA 2190 0.4447 MGNSHSHRKHRNSPSQNHNSSSVATPSHYKYAAAHHYPQPQQQQQHNSRTMMGKVSLPYARVDTTLRGLAANAEGFGRFAIGGLHGPLYHVTTLADDGPGSLRDACRKKEPLWILFEVSGALHLSSYLNVSSYKTIDGRGQRIKITGKGLRLKECEHVIVCNLEFEGGRGPDVDGIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISRCHFFNHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGLYAACASVESQIYSQHNIYEAAQKKVAFKYLSEKAADNGANASGHIISEGDLFINGAQSGLMASNNLECNHFHPREYYPTWTVEPPSDDLKQVLQHCSGWQSIARPSDQTVEHGAHGEPVPIYSFQTHSMVASLPYERADSTLRALAGLAEGFGRSAIGGLHGSLGHVTTLADDGPGSLRDACRRKDPLWIVFQVSGTIHLSSFLSVSSYKTIDGRGRRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDGDAIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSKHNKTTLIGADPTHVGDRCIRVTIHHCFFDETRQRHPRVRFAKVHLYNNYSRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGEEASGHIISEGDMFINGAQSRLMIDNNNGIKIFHPSEYYPTWTVEPPSDNLKQVLQYVTGWQSIARPED 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122117g00001 729 PANTHER PECTATE LYASE 18-RELATED 54 335 IPR045032 GO:0030570
Stsc122117g00001 729 SUPERFAMILY Pectin lyase-like 420 708 IPR011050 -
Stsc122117g00001 729 SMART amb_all 448 646 IPR002022 -
Stsc122117g00001 729 SMART amb_all 99 297 IPR002022 -
Stsc122117g00001 729 Gene3D - 408 704 IPR012334 -
Stsc122117g00001 729 Gene3D - 59 359 IPR012334 -
Stsc122117g00001 729 SUPERFAMILY Pectin lyase-like 72 378 IPR011050 -
Stsc122117g00001 729 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Stsc122117g00001 729 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Stsc122117g00001 729 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Stsc122117g00001 729 Pfam Pectate lyase 477 639 IPR002022 -
Stsc122117g00001 729 Pfam Pectate lyase 128 290 IPR002022 -
Stsc122117g00001 729 SMART pbh1 531 552 IPR006626 -
Stsc122117g00001 729 SMART pbh1 206 227 IPR006626 -
Stsc122117g00001 729 SMART pbh1 555 589 IPR006626 -
Stsc122117g00001 729 SMART pbh1 182 203 IPR006626 -
Stsc122117g00001 729 SMART pbh1 155 180 IPR006626 -
Stsc122117g00001 729 SMART pbh1 504 529 IPR006626 -
Stsc122117g00001 729 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122117g00001 Stsc-Chr122117 1994 9316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122117g00001 437 729 Polysaccharide Lyase AT3G55140 73.379 5.31e-159 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122117g00001 K01728 - ecad:122607709 1025.77