LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc122113g00004	ATGGTTTCGGTTCATCCACATGCGTGTCCTTTCTTTGTCTTCTCTTCGTCTTCTTCCTCCTCTTTTGTTGGTGGTTCACTCCAGTTTCGTCGTTATCTCTCCTCAAGTTTAAGCCCACCGAGAATCAGCACCAGGGAGCATCCTTCTTTCTTCTGCAATTCTTCATGGCAAGAGCTCGCTGGAGTTTTACTGTTCTCGGCGTTTCCATTCGCCGCCGTGAAAGCTATAGCTAATAGTCCTCTAGGGGAATCACTTCAGAGGAAAATGGAGGAGAGAAAGAAATTTGCTGTCGAAAACTCTTCCAAATTCAAGGCCTTAGCCCAGGAGGCCCGAAACAAGAGCTTTTGGTATGGAGAAGGTCGGCCTGGTTGGCTTGGTCCTATTTCATATGAATATCCATCATATCTTACTGGTGAACTGCCTGGAGATTATGGCTTTGACATTGCTGGGCTTGGCAAGGATCCCGTCACACTGCAGAAATATTTCAACTTTGAGATATTGCATGCTCGGTGGGCAATGCTTGCATCTATTGGTGCTCTTATTCCTGAAACATTGGACCTATTGGGAACCGTTCACTTTGCCGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTCTAGATTACCTGGGCATCCAGGGTCTTCACTTAGCTGGTAGCCAAGGAGTGCTTGTGATTGCTATTTGCCAGGCTCTCCTTATGGTTGGACCGGAATATGCTAGATATTGTGGGACTGAAGCATTGGAGCCTCTAGGAATATTTCTGCCTGGTGATATAAATTATCCTGGAGGAGCATTGTTTGATCCCTTAAATTTGTCCAAAGATCCTGAAGCTTTTGAGGATTTGAAGGTGAAAGAAATTAAAAATGGACGCCTAGCTATGATTGCCTGGTTAGGCTTTTACGTGCAAGCAGCTCTGACGGGTAAAGGTCCTGTGCAGAACTTTCTTGACCACATCTCTGATCCTCTCCATAATAACTTGCTTGCTTCACTAAACTTCGTGAAAACACTTTATTAA	1029	0.4509	MVSVHPHACPFFVFSSSSSSSFVGGSLQFRRYLSSSLSPPRISTREHPSFFCNSSWQELAGVLLFSAFPFAAVKAIANSPLGESLQRKMEERKKFAVENSSKFKALAQEARNKSFWYGEGRPGWLGPISYEYPSYLTGELPGDYGFDIAGLGKDPVTLQKYFNFEILHARWAMLASIGALIPETLDLLGTVHFAEPVWWRVGYSKLKGDTLDYLGIQGLHLAGSQGVLVIAICQALLMVGPEYARYCGTEALEPLGIFLPGDINYPGGALFDPLNLSKDPEAFEDLKVKEIKNGRLAMIAWLGFYVQAALTGKGPVQNFLDHISDPLHNNLLASLNFVKTLY	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc122113g00004	342	Coils	Coil	342	342	-	-
	Stsc122113g00004	342	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	94	339	IPR001344	GO:0009765\|GO:0016020
	Stsc122113g00004	342	Gene3D	Chlorophyll a/b binding protein domain	123	335	-	-
	Stsc122113g00004	342	FunFam	Chlorophyll a-b binding protein, chloroplastic	123	335	-	-
	Stsc122113g00004	342	SUPERFAMILY	Chlorophyll a-b binding protein	115	334	-	-
	Stsc122113g00004	342	Pfam	Chlorophyll A-B binding protein	133	308	IPR022796	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc122113g00004	Stsc-Chr122113	12184	15477	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc122113g00004	41	336	Chloroplast and Mitochondria Gene Families	AT1G76570	78.378	6.43e-176	489

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc122113g00004	K14172		-	gmx:100786260	543.502