Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122113g00003 ATGGAGGAGAGAAAGAAATTTGCTGTCGAAAACTCTTCCAAATTCAAGGCCTTAGCCCAGGAGGCCCGAAACAAGAGCTTTTGGTATGGAGAAGGTCGGCCTGGTTGGCTTGGTCCTATTTCATATGAATATCCATCATATCTTACTGGTGAACTGCCTGGAGATTATGGCTTTGACATTGCTGGGCTTGGCAAGGATCCCGTCACACTGCAGAAATATTTCAACTTTGAGATATTGCATGCTCGGTGGGCAATGCTTGCATCTATTGGTGCTCTTATTCCTGAAACATTGGACCTATTGGGAACCGTTCACTTTGCCGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTCTAGATTACCTGGGCATCCAGGGTCTTCACTTAGCTGGTAGCCAAGGAGTGCTTGTGATTGCTATTTGCCAGGCTCTCCTTATGGTTGGACCGGAATATGCTAGATATTGTGGGACTGAAGCATTGGAGCCTCTAGGAATATTTCTGCCTGGTGATATAAATTATCCTGGAGGAGCATTGTTTGATCCCTTAAATTTGTCCAAAGATCCTGAAGCTTTTGAGGATTTGAAGGTGAAAGAAATTAAAAATGGACGCCTAGCTATGATTGCCTGGTTAGGCTTTTACGTGCAAGCAGCTCTGACGGGTAAAGGTCCTGTGCAGAACTTTCTTGACCACATCTCTGATCCTCTCCATAATAACTTGCTTGCTTCACTAAACTTCGTGAAAACACTTTATTAA 765 0.4431 MEERKKFAVENSSKFKALAQEARNKSFWYGEGRPGWLGPISYEYPSYLTGELPGDYGFDIAGLGKDPVTLQKYFNFEILHARWAMLASIGALIPETLDLLGTVHFAEPVWWRVGYSKLKGDTLDYLGIQGLHLAGSQGVLVIAICQALLMVGPEYARYCGTEALEPLGIFLPGDINYPGGALFDPLNLSKDPEAFEDLKVKEIKNGRLAMIAWLGFYVQAALTGKGPVQNFLDHISDPLHNNLLASLNFVKTLY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122113g00003 254 Gene3D Chlorophyll a/b binding protein domain 35 247 - -
Stsc122113g00003 254 SUPERFAMILY Chlorophyll a-b binding protein 27 246 - -
Stsc122113g00003 254 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 16 251 IPR001344 GO:0009765|GO:0016020
Stsc122113g00003 254 FunFam Chlorophyll a-b binding protein, chloroplastic 35 247 - -
Stsc122113g00003 254 Pfam Chlorophyll A-B binding protein 45 220 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122113g00003 Stsc-Chr122113 12184 15477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122113g00003 1 248 Chloroplast and Mitochondria Gene Families AT1G76570 81.452 3.18e-154 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122113g00003 K14172 - gmx:100786260 473.396