Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122113g00002 ATGGAGAAGATGACTGGAGCAGGAGGCGGAGGAGCGACAACAGTAGTGTTGTCGGCAAAGGAGGCGTTCGAGAAATTGGAGAAGGTTGGAGAAGGGACGTACGGGAAGGTGTACAGGGCGAGGGACAAGGCCACCGGCAAGATCGTGGCCCTGAAGAAGACTCGCCTCCACGAGGACGAAGAGGGCGTACCTCCCACCACACTCCGCGAGGTGTCCATCCTCCGCATGCTCTCCCGCGATCCCCATGTTGTCAGGTTAATGGACGTCAAACAAGGTCAGAACAAGGAAGGCAAGACCGTTCTCTACCTGGTCTTCGAGTACATGGACACCGATCTCAAGAAATTCATTCGCTCTTTCCGTCAGACTGGTCAAAACATCCCACCCAAGACCGTCAAAAGCTTGATGTACCAACTCTGCAAGGGCGTTGCTTTCTGCCATGGACATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAACAACAATGATGCTCAAAATAGCTGATCTTGGACTCGCTCGAGCTTTTACCGTGCCAATTAAGAAATACACCCACGAGATACTAACCCTGTGGTATAGAGCTCCCGAAGTCCTTCTGGGAGCCACCCATTACTCAATGGCGGTGGATATGTGGTCCGTTGGCTGCATATTTGCTGAACTTGTCACCAAGCAAGCCCTTTTCCCTGGTGATTCGGAACTGCAACAACTCCTCCATATATTCAGGCAATTGGGTACCCCTAATGAAGAGGTTTGGCCAGGTGTTAGTGAACTAATGAACTGGCATGAGTACCCCCAGTGGAAGTGTCAAAGTCTCTCCATGGCTGTTCCAACCTTGGATGAGCAAGGAATCAATCTGCTATCTCAAATGCTGCAATATGAGCCTTCCAAGCGGATTTCTGCAAAGAAAGCTATGGAACACCCTTACTTCGATGACCTGGACAAGACCTATCTTTAG 966 0.5062 MEKMTGAGGGGATTVVLSAKEAFEKLEKVGEGTYGKVYRARDKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGQNIPPKTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRTTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDMWSVGCIFAELVTKQALFPGDSELQQLLHIFRQLGTPNEEVWPGVSELMNWHEYPQWKCQSLSMAVPTLDEQGINLLSQMLQYEPSKRISAKKAMEHPYFDDLDKTYL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122113g00002 321 Gene3D Phosphorylase Kinase; domain 1 18 109 - -
Stsc122113g00002 321 ProSiteProfiles Protein kinase domain profile. 23 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122113g00002 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Stsc122113g00002 321 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Stsc122113g00002 321 SUPERFAMILY Protein kinase-like (PK-like) 19 317 IPR011009 -
Stsc122113g00002 321 FunFam Cyclin-dependent kinase B2,2 19 109 - -
Stsc122113g00002 321 Pfam Protein kinase domain 23 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122113g00002 321 SMART serkin_6 23 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122113g00002 321 Gene3D Transferase(Phosphotransferase) domain 1 111 320 - -
Stsc122113g00002 321 FunFam Cyclin-dependent kinase 2 111 320 - -
Stsc122113g00002 321 PANTHER CELL DIVISION PROTEIN KINASE 21 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122113g00002 Stsc-Chr122113 6918 9097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122113g00002 16 321 Core Cell Cycle Gene Families AT1G20930 86.319 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Stsc122113g00002 Pkinase 4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122113g00002 K07760 - gmx:547738 583.563