LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc122110g00002	ATGGCTAGGAGCTGGCTTTTTGACATAGGTGGATTTGCAAGGAAAGTGAAAAGCACAAATTTATCTTCCGCTGGTCAAATAAAAGATTGTGGGGCATATCGTGAATGTCCAAACTGTAATTACTGTATTGATAACCGGGATGTTTCTGCCGAGTGGCCTGGCTTTCCTGTTGGTGTGAAGTTTGATCCTTCTGATGTAGAACTCCTAGAACATTTAGCAGGAAAATGTGGCATTGGAAATACACAGCTGCATATGTTTATTAATGAGTTCATTCCAACACTAGACGAAGAAGAAGGTATTTGCTATACACATCCGGAAAATCTTCCAGGTGTCAAGAAAGATGGGAGCAGTGTCCATTTCTTTCATAGAACAACCAATGCCTATACTACTGGTCAACGGAAGCGTCGAAAGATTCATCATCAATCTTTGACTGAAGAACATGTACGGTGGCATAAGACTGGTAAGACAAAAGCTATATTAGAGGATGGAGTACATAAGGGCTTTAAGAAGATCATGGTTCTTTATATAAGACCTAAGAAAGGGTCCAAACCCGAAAAAACCAATTGGGTGATGCACCAATACCATTTAGGGACTGATGAAGAGGAGAAGGAAGGTGAATATGTGGTTTCAAAGATTTTACACAAGCAAACTGAGAAAAATGAGGAGAATCCAGCGGCTGAAGATTTTGACCAGAATGAGAAAAATGAGAATCAATTGGCTGATGATTCCAACTGTATGGCATGCCGGACCAGTCCAAGGACTCCGAAACCTAACCCCCCAAATCCACCTCGACCTGGAAAAGTTGTAGACAATGATGATAATATTGACGAAACTGAACTTCAATTCGCCCAGGATGTGAAGAGTGTCCCACTATGTGATGTTCCGGATCAGAACAATGCTGGTGACCCTGCATGGCTGGCAGGTGAATCGCAGGCTGTAGAGAACTTCGACTTTGATGGCTTGGATGACATCTTGTTCTGCAACGAAATATTCGATTCTTCAGCTCTACTAGGTTTATCTGGAACAGAAACCACAGCAGATGGATTTGCTTCCTCCAATGCAAACGATATGGTTGGGAATAATAATAATTTATCTAATGAAACTTCGGTTCTTGACACCCTTGATTTGGGTACTCCCCCGGATTTTGATCTTTCAAATCTGGATTTTTATTCTCAAGACAGTATATTCGACTGGGTTGACAGATTATGA	1209	0.4136	MARSWLFDIGGFARKVKSTNLSSAGQIKDCGAYRECPNCNYCIDNRDVSAEWPGFPVGVKFDPSDVELLEHLAGKCGIGNTQLHMFINEFIPTLDEEEGICYTHPENLPGVKKDGSSVHFFHRTTNAYTTGQRKRRKIHHQSLTEEHVRWHKTGKTKAILEDGVHKGFKKIMVLYIRPKKGSKPEKTNWVMHQYHLGTDEEEKEGEYVVSKILHKQTEKNEENPAAEDFDQNEKNENQLADDSNCMACRTSPRTPKPNPPNPPRPGKVVDNDDNIDETELQFAQDVKSVPLCDVPDQNNAGDPAWLAGESQAVENFDFDGLDDILFCNEIFDSSALLGLSGTETTADGFASSNANDMVGNNNNLSNETSVLDTLDLGTPPDFDLSNLDFYSQDSIFDWVDRL	402

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc122110g00002	402	MobiDBLite	consensus disorder prediction	216	237	-	-
Stsc122110g00002	402	SUPERFAMILY	NAC domain	40	215	IPR036093	GO:0003677\|GO:0006355
Stsc122110g00002	402	ProSiteProfiles	NAC domain profile.	55	215	IPR003441	GO:0003677\|GO:0006355
Stsc122110g00002	402	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 73	3	311	IPR044799	GO:0003700
Stsc122110g00002	402	Pfam	No apical meristem (NAM) protein	56	196	IPR003441	GO:0003677\|GO:0006355
Stsc122110g00002	402	Gene3D	NAC domain	65	220	IPR036093	GO:0003677\|GO:0006355
Stsc122110g00002	402	FunFam	NAC domain-containing protein 8	64	219	-	-
Stsc122110g00002	402	MobiDBLite	consensus disorder prediction	216	272	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc122110g00002	Stsc-Chr122110	2295	6060	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc122110g00002	33	215	NAC Transcription Factor Family	AT4G28500	57.838	2.02e-69	219

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Stsc122110g00002		NAM	8.7e-21	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc122110g00002	-		-	gmx:100794879	525.013

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