Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122110g00002 ATGGCTAGGAGCTGGCTTTTTGACATAGGTGGATTTGCAAGGAAAGTGAAAAGCACAAATTTATCTTCCGCTGGTCAAATAAAAGATTGTGGGGCATATCGTGAATGTCCAAACTGTAATTACTGTATTGATAACCGGGATGTTTCTGCCGAGTGGCCTGGCTTTCCTGTTGGTGTGAAGTTTGATCCTTCTGATGTAGAACTCCTAGAACATTTAGCAGGAAAATGTGGCATTGGAAATACACAGCTGCATATGTTTATTAATGAGTTCATTCCAACACTAGACGAAGAAGAAGGTATTTGCTATACACATCCGGAAAATCTTCCAGGTGTCAAGAAAGATGGGAGCAGTGTCCATTTCTTTCATAGAACAACCAATGCCTATACTACTGGTCAACGGAAGCGTCGAAAGATTCATCATCAATCTTTGACTGAAGAACATGTACGGTGGCATAAGACTGGTAAGACAAAAGCTATATTAGAGGATGGAGTACATAAGGGCTTTAAGAAGATCATGGTTCTTTATATAAGACCTAAGAAAGGGTCCAAACCCGAAAAAACCAATTGGGTGATGCACCAATACCATTTAGGGACTGATGAAGAGGAGAAGGAAGGTGAATATGTGGTTTCAAAGATTTTACACAAGCAAACTGAGAAAAATGAGGAGAATCCAGCGGCTGAAGATTTTGACCAGAATGAGAAAAATGAGAATCAATTGGCTGATGATTCCAACTGTATGGCATGCCGGACCAGTCCAAGGACTCCGAAACCTAACCCCCCAAATCCACCTCGACCTGGAAAAGTTGTAGACAATGATGATAATATTGACGAAACTGAACTTCAATTCGCCCAGGATGTGAAGAGTGTCCCACTATGTGATGTTCCGGATCAGAACAATGCTGGTGACCCTGCATGGCTGGCAGGTGAATCGCAGGCTGTAGAGAACTTCGACTTTGATGGCTTGGATGACATCTTGTTCTGCAACGAAATATTCGATTCTTCAGCTCTACTAGGTTTATCTGGAACAGAAACCACAGCAGATGGATTTGCTTCCTCCAATGCAAACGATATGGTTGGGAATAATAATAATTTATCTAATGAAACTTCGGTTCTTGACACCCTTGATTTGGGTACTCCCCCGGATTTTGATCTTTCAAATCTGGATTTTTATTCTCAAGACAGTATATTCGACTGGGTTGACAGATTATGA 1209 0.4136 MARSWLFDIGGFARKVKSTNLSSAGQIKDCGAYRECPNCNYCIDNRDVSAEWPGFPVGVKFDPSDVELLEHLAGKCGIGNTQLHMFINEFIPTLDEEEGICYTHPENLPGVKKDGSSVHFFHRTTNAYTTGQRKRRKIHHQSLTEEHVRWHKTGKTKAILEDGVHKGFKKIMVLYIRPKKGSKPEKTNWVMHQYHLGTDEEEKEGEYVVSKILHKQTEKNEENPAAEDFDQNEKNENQLADDSNCMACRTSPRTPKPNPPNPPRPGKVVDNDDNIDETELQFAQDVKSVPLCDVPDQNNAGDPAWLAGESQAVENFDFDGLDDILFCNEIFDSSALLGLSGTETTADGFASSNANDMVGNNNNLSNETSVLDTLDLGTPPDFDLSNLDFYSQDSIFDWVDRL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122110g00002 402 MobiDBLite consensus disorder prediction 216 237 - -
Stsc122110g00002 402 SUPERFAMILY NAC domain 40 215 IPR036093 GO:0003677|GO:0006355
Stsc122110g00002 402 ProSiteProfiles NAC domain profile. 55 215 IPR003441 GO:0003677|GO:0006355
Stsc122110g00002 402 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 311 IPR044799 GO:0003700
Stsc122110g00002 402 Pfam No apical meristem (NAM) protein 56 196 IPR003441 GO:0003677|GO:0006355
Stsc122110g00002 402 Gene3D NAC domain 65 220 IPR036093 GO:0003677|GO:0006355
Stsc122110g00002 402 FunFam NAC domain-containing protein 8 64 219 - -
Stsc122110g00002 402 MobiDBLite consensus disorder prediction 216 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122110g00002 Stsc-Chr122110 2295 6060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122110g00002 33 215 NAC Transcription Factor Family AT4G28500 57.838 2.02e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc122110g00002 NAM 8.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122110g00002 - - gmx:100794879 525.013