Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122107g00002 CTAAACAGGTGCCGAAAGAGCTGCAGGCTAAGATGGCTGAACTACCTGCGTCCCAACATCAAAAGAGGAAATTTTGCAGAGGAAGAAGTGGAGATGATTGTTAAACTCCACAAATTATTGGGAAACAGGTGGTCACTGATTGCAGGAAGGCTACCAGGAAGGACTGCGAACGATGTGAAGAACTATTGGAACTGCCATCTGAGCAAGAAACTCAGTGCAATAGAAGGCGAAGACAGATCAGAGGCAACCGAAAACGTTGAACTCATTAGGCCACAGCCTAGAAACATTGGTACTACTTCAACCTCCGTCAAGAGAAGAAGGGGAATTCAGGGCGAGTTGTCATCACCCCCAGTCGCGACCGACTTTCTTGCTCAACAAGAAATCAGTGGCATGTCGTCCACAATGACGTTCGATGCCGAGGGACAAAGCCATAATAACATGCTCGAATCGCAGCTAGAGAACAACATATACTCTTGCTTGGATCAGCAGGACATTGTTGGCGAGTTGCCAATGGATTTCCCGTTCGAAGAAGAAGGAGTGGAAGAGATGATCAACTCCGGCGAAGGTAGTACCGGGCAGTGGGATTGGGATGACTTGCTTTTGGACATGGATCTATATAAAGATTTTGCAACTAATTAG 639 0.4679 LNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLSAIEGEDRSEATENVELIRPQPRNIGTTSTSVKRRRGIQGELSSPPVATDFLAQQEISGMSSTMTFDAEGQSHNNMLESQLENNIYSCLDQQDIVGELPMDFPFEEEGVEEMINSGEGSTGQWDWDDLLLDMDLYKDFATN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122107g00002 212 SUPERFAMILY Homeodomain-like 2 74 IPR009057 -
Stsc122107g00002 212 Gene3D - 1 21 - -
Stsc122107g00002 212 Gene3D - 24 90 - -
Stsc122107g00002 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 16 IPR017930 -
Stsc122107g00002 212 Pfam Myb-like DNA-binding domain 22 64 IPR001005 -
Stsc122107g00002 212 CDD SANT 24 67 IPR001005 -
Stsc122107g00002 212 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 134 - -
Stsc122107g00002 212 SMART sant 21 69 IPR001005 -
Stsc122107g00002 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 71 IPR017930 -
Stsc122107g00002 212 ProSiteProfiles Myb-like domain profile. 17 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122107g00002 Stsc-Chr122107 10970 13262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122107g00002 1 139 MYB Transcription Factor Family AT5G40330 49.286 8.85e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc122107g00002 Myb_DNA-binding 6.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122107g00002 - K09422 gmx:100798101 258.455