Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122106g00001 ATGAAGAAGTTCTTGGCTTCTTTTTATTTCTTGTTCCCTGCAACAGTTTCAATCATTCTTGTGCTTCTAACTCCAATTCCAAGTGCACAATTAACAAGCACTGAAAGCAGAATCCTCCTCCAAGTTCAGAAGCTTCTAGAATACCCTCAAGCTCTTCAACCATGGAACAACTTCACCACCAACTTCTGCTTCCTCCCCCCATCACAATCCCTCAAGATTCTATGCTCCAATGGCCATGTAACCGAACTAGCCATCATTGGACACAAAGGTTCTTCTTTGAGTTATCAGTATCATCATCATCATCAAGATCAAGAAGCTCTTTCTGAAAGGTTCTCAATTCATGATCTTTTCATTGTGCTCTCAAGGCTTTCAAATTTGAAGGCTTTGTCTTTGGTTTCACTTGGCTTATGGGGTCATTTACCATCCGAGATTGCCCGGTTTGGATCGATCGAATCCATGAATTTAAGCTCAAACTTCATCAATGGAAGAATTCCATCATCAATTTCTTCTATGAGGACACTTAAGAGTCTTGTTCTAGCTCATAATCTCCTCAATGGAACTATACCTGATCTAGGAATGCTATCTTCTCTTCAAGAACTTGACTTGGGCTTCAATCATTTCGGTCCAGAGTTCCCTTCACTGAGCAAGAATCTTGTGAAGATTATCTTAAGAAACAACTCTTTCACATCCCAAATCCCTTCGGAACTCATCAAATTCTCAAGGCTTCAGCAATTTGACATCTCTTCCAATGGAATTTTCGGAACCATTCCTTTGTTTTTGTTCTCCCTTCCTTCTCTTCAGGACTTAAACTTGGCATCAAACCAATTCAGGGGCTCACTCTCTCTGAACACAACTTGTGGTTCTGTTCTAACTTGTGTTGATGTTTCATACAACCTTTTAACAGGAAACTTGCCTTCTTGCTTAGCTTCCAAGTCATCTAAACGAACCATAATATATTCGTGGAATTGTTTGTCAGCAAGGGGATTGAGTGATCAGCATCCTGCTTCATATTGCAAGAGAGAGATGGATTCCTTGACAGCTAAGTCACCGGTTCGAAACCAGAAGGAGGAGTCAGAGATTCATCTAGGCCTAGCTCTTGGTGTTCTTGGAGTTGTTACAGGAGCTACCGGGCTTGTGGCTCTGCTCATTCTGTTCACCCTGAAGAAGCACAAAGCAAAAATTGCCAAAAAGGATACCATTGATAACAAATCTGATGCTGATAAAATTCCCATCAATCTATATCCAGGACCAAAAATTGATACAAGATGTACTACAGAAAGAATGAGTCTAGCAGTACTTGGATTGCCACCATATTGCAATTTCACATCAGATGAAATTGGAGATGCAACAAACAACTTTCGCCAATCAAATTTAATCGGAGAAGGATCACAGGGACAGCTATATAAGGGCAAGCTCATAGATGGTTCAATGGTGCTTGTTAACCGTGTAAGGCTAAAGCAGAAGAGTTTGAACAGAAACAGTATGCAGAACTTGGAGATGGTGTTACCAAATTTAAGGCACAGGAATTTGGTTAGTGTTTTAGGACACTGCTTCATTAATTGTGAGGACCAATCCCAAACTAGAAGCACAATCTACATTGTATTTGAGCACATCTCAAATGTGTCAACCTTAAAGGACCATCTTTCAGATAGGATGAAAAGGGAAATGCTAAAATGGCCACAAAGAATGGCAATAAGCATAGGCATTGCAAGAGGAATCCAGTTCCTACACACAGGAGTTACTCCTGGAATCTATGGCAACAATTTAAGGATTGAGAACATTCTTTTGGATCATAGTCTCAATGCAAAAGTTAGTGGATACTGTATTCCATTGCCATCAAAGAAAGGCCTTGATAGGAGACAGAATGAACAATGTGTACCCAGTAATAGGGGCAGCAGTGAAGAAAAGGAAGATATATATCAGTTGGGTGTTATTCTGATTCAAATAATCACTGGCAAGCTAATTACATCTTCACGTGAATTAGAGCAGCTAAAAGATGAGATGGAGAGAGGTTTATCAGAAGCTGCATCATCAACACCAAGGCTGACAGTTGATCCTTACCTGAGGGGAATTTATGTATATGAATCTGTGAGAACTGCACTTCAGATCACCATCAATTGTCTCAGCAAGGTCACTATGAATCGCCCTTCAATAGAGGATGTTCTCTGGAATTTGCAGTACTCAATGCAAGTTCAAGAAGCCAGGAGCAGCAGTGGGAATAGTCCAAGATTGTAA 2235 0.404 MKKFLASFYFLFPATVSIILVLLTPIPSAQLTSTESRILLQVQKLLEYPQALQPWNNFTTNFCFLPPSQSLKILCSNGHVTELAIIGHKGSSLSYQYHHHHQDQEALSERFSIHDLFIVLSRLSNLKALSLVSLGLWGHLPSEIARFGSIESMNLSSNFINGRIPSSISSMRTLKSLVLAHNLLNGTIPDLGMLSSLQELDLGFNHFGPEFPSLSKNLVKIILRNNSFTSQIPSELIKFSRLQQFDISSNGIFGTIPLFLFSLPSLQDLNLASNQFRGSLSLNTTCGSVLTCVDVSYNLLTGNLPSCLASKSSKRTIIYSWNCLSARGLSDQHPASYCKREMDSLTAKSPVRNQKEESEIHLGLALGVLGVVTGATGLVALLILFTLKKHKAKIAKKDTIDNKSDADKIPINLYPGPKIDTRCTTERMSLAVLGLPPYCNFTSDEIGDATNNFRQSNLIGEGSQGQLYKGKLIDGSMVLVNRVRLKQKSLNRNSMQNLEMVLPNLRHRNLVSVLGHCFINCEDQSQTRSTIYIVFEHISNVSTLKDHLSDRMKREMLKWPQRMAISIGIARGIQFLHTGVTPGIYGNNLRIENILLDHSLNAKVSGYCIPLPSKKGLDRRQNEQCVPSNRGSSEEKEDIYQLGVILIQIITGKLITSSRELEQLKDEMERGLSEAASSTPRLTVDPYLRGIYVYESVRTALQITINCLSKVTMNRPSIEDVLWNLQYSMQVQEARSSSGNSPRL 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122106g00001 744 Coils Coil 654 674 - -
Stsc122106g00001 744 Gene3D Ribonuclease Inhibitor 32 213 IPR032675 -
Stsc122106g00001 744 Pfam Protein kinase domain 454 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122106g00001 744 SUPERFAMILY Protein kinase-like (PK-like) 432 725 IPR011009 -
Stsc122106g00001 744 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 361 737 - -
Stsc122106g00001 744 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 32 216 - -
Stsc122106g00001 744 SUPERFAMILY L domain-like 120 326 - -
Stsc122106g00001 744 ProSiteProfiles Protein kinase domain profile. 453 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc122106g00001 744 Gene3D Transferase(Phosphotransferase) domain 1 540 741 - -
Stsc122106g00001 744 Gene3D Phosphorylase Kinase; domain 1 418 527 - -
Stsc122106g00001 744 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 538 741 - -
Stsc122106g00001 744 Gene3D Ribonuclease Inhibitor 214 338 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122106g00001 Stsc-Chr122106 7099 10476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122106g00001 29 665 Miscellaneous Gene Families AT2G02780 45.358 1.13e-162 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc122106g00001 Pkinase 2.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122106g00001 - - adu:107489186 1215.68