Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122101g00006 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGCCGGCGGCGGCGGTGTCAGCTAGGTCTCGCCGGCTCACCGCGGAGTACCTGTGGCCTGACCTGAAGAAAGGCAGCTCAGGGAAGCGCGTTCCCAAAGCAGCGGTGATCAACCTCGACGATGATTTCGAGGCCGATTTCAGGGAATTCAAGGACGACTCTGACATCGACATTGATGACGATGAGGATGATGCAAAGCCCTTTGCTTTCGCTGCCGCTAAAGCTCCCAAGTCCATACCCCGTGCTGGAAAATCTGTGGCGGTTAAAGCACAATCTGAGAAGCCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATCCGTCAGCGTCCTTGGGGGAAATGGGCGGCTGAGATCCGTGATCCAAGAAAGGGTGTTCGTGTCTGGCTAGGAACCTTCAACACTGCCGAAGAGGCTGCTAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAGGCACCACACACTCCTCCAAAACGCGCCAGGCCAAATCTGGACACTGTTCAGCCCAATCTGAGCTACAAATTCAATGCTGGTAACAATGTGGAGAACTATGGTCCTCTAAATGTGGTTGAACAGAAACCACTGGTTAACCAGACTGCTAACATGGATTCCTTTCCTGAGGGTGGAAATGGTTTCACATCCCTTGCCTCACCTGATGATGTGACCCTTTACTTTGGTTCAGATCAGGGGAGTAATACATTTGATTATTCAGATCTTCATTGGGGTGAGGCCCCAAAGACTCCAGAGATCTCATCCATGCTTTCTGCTGCTTTGGAAGGGGAATCTCATTTTGTGCAAGATGCTAACCAACAGCAAAGCCTGCAGTCTAACTCACAGGATGTGGTACCTTTGAAAGATGATTCCGCAAAGACACTGTCTGAGGAGCTTGTGGATATTGAATCCGATTTGAAATTCTTTCAGATGCCTTTTCTTGAAGGGAGCTGGGATGATACTTCATTGGAATCATTGCTAGCTGAAGACACCATTCAGGATGGTGGAAACCTGATGGACATGTGGAGCTTTGAGGACATTCCTTCCATGGCTGGTGGAGTGTTCTGA 1125 0.4942 MCGGAIISDFIPPAAAVSARSRRLTAEYLWPDLKKGSSGKRVPKAAVINLDDDFEADFREFKDDSDIDIDDDEDDAKPFAFAAAKAPKSIPRAGKSVAVKAQSEKPAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPHTPPKRARPNLDTVQPNLSYKFNAGNNVENYGPLNVVEQKPLVNQTANMDSFPEGGNGFTSLASPDDVTLYFGSDQGSNTFDYSDLHWGEAPKTPEISSMLSAALEGESHFVQDANQQQSLQSNSQDVVPLKDDSAKTLSEELVDIESDLKFFQMPFLEGSWDDTSLESLLAEDTIQDGGNLMDMWSFEDIPSMAGGVF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122101g00006 374 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Stsc122101g00006 374 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Stsc122101g00006 374 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Stsc122101g00006 374 CDD AP2 114 172 IPR001471 GO:0003700|GO:0006355
Stsc122101g00006 374 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Stsc122101g00006 374 PANTHER DNA-BINDING DOMAIN 95 288 IPR044808 GO:0003700|GO:0009873
Stsc122101g00006 374 MobiDBLite consensus disorder prediction 93 117 - -
Stsc122101g00006 374 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Stsc122101g00006 374 FunFam Ethylene-responsive transcription factor 2 113 172 - -
Stsc122101g00006 374 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Stsc122101g00006 374 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122101g00006 Stsc-Chr122101 12381 15191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122101g00006 1 374 AP2-EREBP Transcription Factor Family AT3G14230 44.203 5.64e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc122101g00006 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122101g00006 K09286 - gmx:100170723 424.476