Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122101g00005 ATGTCCTTAACCAACCTTTATTATGCTGTTGGAACTCCAGCTGGAAAATCTGTGGCGGTTAAAGCACAATCTGAGAAGCCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATCCGTCAGCGTCCTTGGGGGAAATGGGCGGCTGAGATCCGTGATCCAAGAAAGGGTGTTCGTGTCTGGCTAGGAACCTTCAACACTGCCGAAGAGGCTGCTAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAGGCACCACACACTCCTCCAAAACGCGCCAGGCCAAATCTGGACACTGTTCAGCCCAATCTGAGCTACAAATTCAATGCTGGTAACAATGTGGAGAACTATGGTCCTCTAAATGTGGTTGAACAGAAACCACTGGTTAACCAGACTGCTAACATGGATTCCTTTCCTGAGGGTGGAAATGGTTTCACATCCCTTGCCTCACCTGATGATGTGACCCTTTACTTTGGTTCAGATCAGGGGAGTAATACATTTGATTATTCAGATCTTCATTGGGGTGAGGCCCCAAAGACTCCAGAGATCTCATCCATGCTTTCTGCTGCTTTGGAAGGGGAATCTCATTTTGTGCAAGATGCTAACCAACAGCAAAGCCTGCAGTCTAACTCACAGGATGTGGTACCTTTGAAAGATGATTCCGCAAAGACACTGTCTGAGGAGCTTGTGGATATTGAATCCGATTTGAAATTCTTTCAGATGCCTTTTCTTGAAGGGAGCTGGGATGATACTTCATTGGAATCATTGCTAGCTGAAGACACCATTCAGGATGGTGGAAACCTGATGGACATGTGGAGCTTTGAGGACATTCCTTCCATGGCTGGTGGAGTGTTCTGA 888 0.4673 MSLTNLYYAVGTPAGKSVAVKAQSEKPAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPHTPPKRARPNLDTVQPNLSYKFNAGNNVENYGPLNVVEQKPLVNQTANMDSFPEGGNGFTSLASPDDVTLYFGSDQGSNTFDYSDLHWGEAPKTPEISSMLSAALEGESHFVQDANQQQSLQSNSQDVVPLKDDSAKTLSEELVDIESDLKFFQMPFLEGSWDDTSLESLLAEDTIQDGGNLMDMWSFEDIPSMAGGVF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122101g00005 295 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Stsc122101g00005 295 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Stsc122101g00005 295 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Stsc122101g00005 295 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Stsc122101g00005 295 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Stsc122101g00005 295 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Stsc122101g00005 295 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Stsc122101g00005 295 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Stsc122101g00005 295 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Stsc122101g00005 295 PANTHER DNA-BINDING DOMAIN 21 234 IPR044808 GO:0003700|GO:0009873
Stsc122101g00005 295 MobiDBLite consensus disorder prediction 17 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122101g00005 Stsc-Chr122101 12381 15191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122101g00005 14 295 AP2-EREBP Transcription Factor Family AT3G14230 43.366 7.98e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc122101g00005 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122101g00005 K09286 - gmx:100810376 375.555