Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122101g00003 ATGTGGTGGAGATCAGCATCATTCATACTAGACAGGCAGCAGAACAACGAGGCTCTGAGGCAGGAAACATCCTCCACCATTACTCCTCCTCCGCCAACCGAATCCTCCACGGCAATGGGATTCCCCACCGACCACAACCCTAACATCTCCGCTTACTACCAGACAAGGGCCGCCCACCACGCCGTCGTTACCAGCGACTGGCTCGCCCAGGCACAGGCTGCCACCACTCCCCACGACCCTCCTCAATCCACCTCCGCCGCAGATCCCGACAAGCCCTTCAGCGTTATCGATGAGTTCAACAACTGGCGCAGACTGCCTGACTTGGCTGAGGCCGTCGCCGCCATTCGCGCCCTCGCCGCCGTCATCAGGTCCAGCCAAGCCTCCACAATGATGCAGCTCGAAATCGAGCTCAAGAAGGCCTCCGATTCTCTCAAAGCTTGGGATACAACTTCAATCTCCTTGACTGCAGGGTGTGATCTGTTTATGCGGTATGTGACGAGGACCTCTGCTTTGGAATATGAAGACTTTAATTCAGCTAAGTCTCGATTAATCGAGCGCGCTGAGAAGTTCGGCGAAATCTCCTACAAGGCCAGGAAAATTATTGCCATGTTGAGTCAAGAGTTTATATTTGATGGCTGTACAATTTTAGTCCATGGGTTTTCCAGGGTTGTCTTTGAAGTTCTAAAACTGGCAGCACAGAATAAAAGGCTATTTAGAGTCTTCTGCACAGAGGGAAGACCGGATCGAACAGGTTTAAGGTTATCAAATGAGCTGGCAAAGCTTGATGTTCCCGTGAAGATTGTAATAGACTCTGCTGTTGCATATACTATGGATGAGGTGGACATGGTTTTTGTGGGTGCAGATGGTGTTGTTGAAAGTGGTGGCATAATTAACATGATGGGGACTTATCAAATCGCATTGGTTGCCAATAGTATGAACAAGCCAGTTTATGTTGCTGCTGAAAGCTATAAGTTTGCTCGTCTTTACCCTCTTGACCAGAAAGACTTGGCTCCTGCCTTGCGCCCTATTGATTTTGGTGTGCCCATTCCATCCAAGGTTGAAGTTGAGAGGTCTGCAAGGGATTACACTCCGCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCAGTTGTTAGTGATGAGCTGATCCAGTTATACTTATAG 1179 0.4902 MWWRSASFILDRQQNNEALRQETSSTITPPPPTESSTAMGFPTDHNPNISAYYQTRAAHHAVVTSDWLAQAQAATTPHDPPQSTSAADPDKPFSVIDEFNNWRRLPDLAEAVAAIRALAAVIRSSQASTMMQLEIELKKASDSLKAWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSAKSRLIERAEKFGEISYKARKIIAMLSQEFIFDGCTILVHGFSRVVFEVLKLAAQNKRLFRVFCTEGRPDRTGLRLSNELAKLDVPVKIVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVANSMNKPVYVAAESYKFARLYPLDQKDLAPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122101g00003 392 MobiDBLite consensus disorder prediction 13 38 - -
Stsc122101g00003 392 Gene3D - 196 392 IPR042529 -
Stsc122101g00003 392 MobiDBLite consensus disorder prediction 72 89 - -
Stsc122101g00003 392 Coils Coil 130 150 - -
Stsc122101g00003 392 FunFam Translation initiation factor eIF-2B subunit alpha 196 392 - -
Stsc122101g00003 392 FunFam Translation initiation factor eIF-2B subunit alpha 91 193 - -
Stsc122101g00003 392 Gene3D - 92 193 IPR042528 -
Stsc122101g00003 392 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 59 392 - -
Stsc122101g00003 392 Pfam Initiation factor 2 subunit family 109 380 IPR000649 GO:0044237
Stsc122101g00003 392 MobiDBLite consensus disorder prediction 72 91 - -
Stsc122101g00003 392 SUPERFAMILY NagB/RpiA/CoA transferase-like 107 391 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122101g00003 Stsc-Chr122101 5644 8133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122101g00003 1 392 Eukaryotic Initiation Factors Gene Family AT1G53880 78.987 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122101g00003 K03239 - qsa:O6P43_027485 642.499