Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122101g00001 ATGGATTCCATAAACTCGTTCAAGGGGTATGGGAAAGTGGACGAGGCAGAGCAGCAAGCCTTCCAGAAAAAGACTCGCAAGCGTCTCATCATCCTCATAGTCTCCTCCATAGTCCTCATAACCCTCATCATCGCCGCCGTACTAGGCACAGTTCTACACAACCGCCGTTCCTCCTCCTCTTCCTCTAGCCCCTCCTCTTCCCCTGCCTCCTCTCTCAAGGCCGTCTGTGAGGTCACCCAGTACCCAAACTCTTGCATGTCCAGCATCTCCTCCCTCCCAGACTACTCCAACACCACCGACCCACACGTCCTCTTCAGCCTCTCCCTCCGCGTCGCCATTAACGAGCTCTCCAAACTCTCCCATTATCCTTCCAAGCTCCGCTCCTCCATCAAGGAACCCCGCCTCCAAAAGGCCATTGATGTCTGTTCTTCCGTCCTCGCCGACGCCATCGCTAACTTTAATGACTCCATCTCCTCCCTCGACGCCGCCGGCAAGCTACCCTCTGCCACCAAGATCAGTGACATTAGGACCTGGGTGAGCGCCGCCATCACCAACCAAGACACCTGCTTGGACGCCCTTCAGGAGGTTAACTCCACCGCCGCCAAAGCCGCCCTCGAGAACATGCAAACCGCCATGAAGAACTCCACGGAGTTTTCGAGCAACAGCCTGGCCATCGTGACGAAGATACTGGGGGTGCTCTCCAGATTCAACAGCCCGGTGAACGGGCGGCGGCTTATGGGGTTCCCGGAGTGGGTGGGGGTGGCGGAGCGGAGGCTGCTGCTGGATGATGGAAACACAACGACAGGAACGACGCCGGATGCGGTGGTGGCGGCGGATGGGAGCGCGCAATACAAGACGATAAAGGAGGCGGTGGTTGCAGTGAAAAAGAAGAGCGTGAAGAGATTCGTGATATATGTGAAGGCAGGGACTTATGTTGAGAACATCGATTTGGATAAAGACACTTGGAATGTGATGATCTACGGTGATGGAATGGACAAGACCATCATCTCCGGCAGCCGCAACTTCATCGACGGCACTCCCACTTTTGAGACTGCCACTTTCGCTGCAAAGGGGAAGGGTTTCATTGCAAAGGACATAGGGTTCAAGAACACGGCAGGCGCAGACAAGCATCAGGCGGTGGCGCTGCGATCAGGGTCGGACCAATCGGTGTTCTACAGGTGCTCATTCGATGGCTTCCAGGACACACTGTACGCCCATTCCAACCGGCAGTTCTACCGCGACTGCGACATCAGCGGCACCATTGACTTCATCTTCGGCAACGCCGCCGTGGTCTTCCAGAACTGCAAGATCATGCCTCGCCAGCCCCTCCCCAACCAGTTCAACACCATAACCGCACAGGGAAAGAAAGATCCCAACCAGGACACCGGAATCGTCATCCAGAAATGCTCCTTCGTTGCCTTCGCCAGTAATCTTCAGGCCCCCACCTACCTGGGCCGCCCCTGGAAGGATTTTTCTACAACCGTCATCATGCAGTCCAATATCGGCCCATTCTTGAATCCTGTGGGCTGGATAAGCTGGGTTGCCAACGTGGACCCACCAAAAACTATATTCTACGGTGAGTATCTTAATACTGGGCCTCGATCTGATGTCTCGAAGCGGGTTACTTGGGCCGGATACAACCCCTCTCTCACTCAAACTGATGCTGCCAAGTTCACTGTGCAGTCCTTTATTCAGGGCCCAGAGTGGCTGCCAAATTCTGCTGTAACGTTTGACTCTGCTCTCTGA 1746 0.5527 MDSINSFKGYGKVDEAEQQAFQKKTRKRLIILIVSSIVLITLIIAAVLGTVLHNRRSSSSSSSPSSSPASSLKAVCEVTQYPNSCMSSISSLPDYSNTTDPHVLFSLSLRVAINELSKLSHYPSKLRSSIKEPRLQKAIDVCSSVLADAIANFNDSISSLDAAGKLPSATKISDIRTWVSAAITNQDTCLDALQEVNSTAAKAALENMQTAMKNSTEFSSNSLAIVTKILGVLSRFNSPVNGRRLMGFPEWVGVAERRLLLDDGNTTTGTTPDAVVAADGSAQYKTIKEAVVAVKKKSVKRFVIYVKAGTYVENIDLDKDTWNVMIYGDGMDKTIISGSRNFIDGTPTFETATFAAKGKGFIAKDIGFKNTAGADKHQAVALRSGSDQSVFYRCSFDGFQDTLYAHSNRQFYRDCDISGTIDFIFGNAAVVFQNCKIMPRQPLPNQFNTITAQGKKDPNQDTGIVIQKCSFVAFASNLQAPTYLGRPWKDFSTTVIMQSNIGPFLNPVGWISWVANVDPPKTIFYGEYLNTGPRSDVSKRVTWAGYNPSLTQTDAAKFTVQSFIQGPEWLPNSAVTFDSAL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122101g00001 581 ProSitePatterns Pectinesterase signature 1. 298 317 IPR018040 -
Stsc122101g00001 581 SUPERFAMILY Pectin lyase-like 268 577 IPR011050 -
Stsc122101g00001 581 Gene3D - 267 581 IPR012334 -
Stsc122101g00001 581 Pfam Pectinesterase 273 566 IPR000070 GO:0030599|GO:0042545
Stsc122101g00001 581 PANTHER PECTINESTERASE 40 571 - -
Stsc122101g00001 581 CDD PMEI-like_3 74 229 - -
Stsc122101g00001 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 230 IPR035513 -
Stsc122101g00001 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 229 IPR035513 -
Stsc122101g00001 581 Pfam Plant invertase/pectin methylesterase inhibitor 71 225 IPR006501 GO:0004857
Stsc122101g00001 581 FunFam Pectinesterase 267 581 - -
Stsc122101g00001 581 SMART PMEI_2 67 225 IPR006501 GO:0004857
Stsc122101g00001 581 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Stsc122101g00001 581 FunFam Pectinesterase 68 230 - -
Stsc122101g00001 581 NCBIfam pectinesterase inhibitor domain 47 229 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122101g00001 Stsc-Chr122101 385 3408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122101g00001 1 575 Carbohydrate Esterase AT1G53840 58.206 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122101g00001 - - gmx:100777128 825.469