Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122099g00001 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACCCCTCACCACCATGATGATCATCATCCACCACCTTCCCTCAATTCAATCCTACCAACATGCTCACCCCATGATTATCACGGGGGAGTAACAACATCATTTCTAGGGAAAAGATCGATGTCATTCTCGGGGATTGATCTCGGAGGAGAAGAAGGTAATAACAACAACAATGGCGAAGAAGATTTATCAGATGATGGATCACAGATAGGTGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGGCGCTGGAGAAGAGCTTCGAGTTAGGGAACAAGCTCGAACCCGAGAGGAAAATGCAGCTCGCAAGGTCCCTTGGATTGCAACCAAGGCAAATTGCGATATGGTTTCAGAATCGGAGAGCAAGGTGGAAGACCAAACAGTTAGAGAGAGATTATGATCAACTCAAGAGACAGTTCGAAGCCGTTAAATCAGACAATGATGCTCTTCAAGCTCAGAACCAAAAACTTCATGCTCAGATATTGGCACTGAAAAATAGAGAAGCAACAACAGAGTCAATAAACCTCAACAAAGACACAGAAGGATCATGCAGTAACAGAAGTGAAAACAGTTCAGAAATCAAGTTTGATATTTCAACAAGAACACCAACACCAACAACAACAACAGCAACCATTGTTGATAGTCCTCTATCATCGAAACCATTCTTTCCATCATCATCATCATCCACTAGGCCCCATCATCAACATGTACAACAACACCAGCTTCTTCAGATTTCTTCAACAAGGCCTGAAATAGAAATCCATCTTCATCAGTGTCATCAACAGAGTAATAATAATAATAATAATCATGTGGTGGCTACTAATAATAAAGAAGAGAGCTTGAGCAGCATGTTTGTTGGAATGGATGATCACTCTGGGTTCTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 948 0.4198 MAFFPANFMLQTPHHHDDHHPPPSLNSILPTCSPHDYHGGVTTSFLGKRSMSFSGIDLGGEEGNNNNNGEEDLSDDGSQIGEKKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKTKQLERDYDQLKRQFEAVKSDNDALQAQNQKLHAQILALKNREATTESINLNKDTEGSCSNRSENSSEIKFDISTRTPTPTTTTATIVDSPLSSKPFFPSSSSSTRPHHQHVQQHQLLQISSTRPEIEIHLHQCHQQSNNNNNNHVVATNNKEESLSSMFVGMDDHSGFWPWLEQQHFN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122099g00001 315 Pfam Homeobox associated leucine zipper 138 178 IPR003106 GO:0006355|GO:0043565
Stsc122099g00001 315 MobiDBLite consensus disorder prediction 59 74 - -
Stsc122099g00001 315 MobiDBLite consensus disorder prediction 188 250 - -
Stsc122099g00001 315 FunFam Homeobox-leucine zipper protein ATHB-13 75 142 - -
Stsc122099g00001 315 Coils Coil 130 178 - -
Stsc122099g00001 315 SMART HOX_1 81 142 IPR001356 GO:0003677
Stsc122099g00001 315 CDD homeodomain 83 139 IPR001356 GO:0003677
Stsc122099g00001 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 265 IPR045224 GO:0003700
Stsc122099g00001 315 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Stsc122099g00001 315 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Stsc122099g00001 315 Gene3D - 75 145 - -
Stsc122099g00001 315 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Stsc122099g00001 315 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Stsc122099g00001 315 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Stsc122099g00001 315 MobiDBLite consensus disorder prediction 56 82 - -
Stsc122099g00001 315 SUPERFAMILY Homeodomain-like 76 140 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122099g00001 Stsc-Chr122099 12206 14202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122099g00001 1 315 Homeobox Transcription Factor Family AT1G69780 56.740 5.58e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc122099g00001 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122099g00001 K09338 - rcu:8286990 377.096