Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122081g00002 ATGGCGCCTTGTTCATCTTCAACTTCCACTGATCAAGCCTCTACCAAGAAGATCAGAAAGCCTTACACCATTACCAAGTCCAGAGAGAGCTGGTCCGATGAAGAACACGACAAGTTCCTCGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGCTCAAAAACTGTTATTCAGATTCGTAGCCATGCTCAAAAGTACTTTTTGAAAGTTCAAAAGAATGGGACAACTGCTCATGTTCCTCCTCCTCGTCCTAAGCGAAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGATGCCATTTCCAGCATCTATCGCTTATGCTTCTTCAAGAAACACCCTGCTACCTGGCTATGCAGCAACATGGGATGAAAATTCAATGCTCATGAATGCTGGATCCAACAGATTCATGCCCTGCCAGGATGAACTTATCACCAATCTTAATGGAAATGAAGCTGATTTTGGATCAAAGGGTATTAGAATGCTGGCAGCTACTGAGATGCCAAATCATGGAAAACAAACCTGTGTAATTCATGGTTTGCCAGATTTTGCTGTAGTTTACAGCTTTATTGGAAGTGTTTTTGATCCTCACAGTAGAGGCCATGTTCATAAGCTGAAGGAAATGGATCCTATAAATTTTCAAACCGTTTTGTTGTTAATGAAAAATCTCACAGTCAACTTGTCTAAACCTGGCATTGAACCCTTTAAGGCATTGCCATTATATGATGTCAATACAAAGACAGTTGGAGTTACTCCTAGAATTCAATGTCAAGAAGCAAACAGATGA 813 0.401 MAPCSSSTSTDQASTKKIRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTTAHVPPPRPKRKAAHPYPQKASKNVLMPFPASIAYASSRNTLLPGYAATWDENSMLMNAGSNRFMPCQDELITNLNGNEADFGSKGIRMLAATEMPNHGKQTCVIHGLPDFAVVYSFIGSVFDPHSRGHVHKLKEMDPINFQTVLLLMKNLTVNLSKPGIEPFKALPLYDVNTKTVGVTPRIQCQEANR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122081g00002 270 MobiDBLite consensus disorder prediction 1 20 - -
Stsc122081g00002 270 ProSiteProfiles Myb-like domain profile. 23 73 IPR001005 -
Stsc122081g00002 270 ProSiteProfiles SANT domain profile. 26 79 IPR017884 -
Stsc122081g00002 270 PANTHER SWI/SNF COMPLEX-RELATED 9 237 - -
Stsc122081g00002 270 MobiDBLite consensus disorder prediction 1 33 - -
Stsc122081g00002 270 FunFam protein REVEILLE 6 isoform X1 30 78 - -
Stsc122081g00002 270 NCBIfam myb-like DNA-binding domain, SHAQKYF class 26 75 IPR006447 GO:0003677
Stsc122081g00002 270 CDD SANT 30 73 IPR001005 -
Stsc122081g00002 270 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Stsc122081g00002 270 SMART sant 27 75 IPR001005 -
Stsc122081g00002 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 77 IPR017930 -
Stsc122081g00002 270 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Stsc122081g00002 270 Gene3D - 31 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122081g00002 Stsc-Chr122081 12051 14812 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc122081g00002 Myb_DNA-binding 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122081g00002 - - gmx:100783482 380.178