Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122071g00001 ATGCCTCCGTCGCAGCCCCGCCGCCTTCCGCCCAAGGCCGCCTCTCTCGACCCTAAAATCTGGCGTGCATGTGCCGGTGCCGCCGTTCACATACCCGCCCTGCATTCTAGGGTTTATTACTTTCCGGAGGGCCATCTCGAACAAGCCTTCCCCCCATCCCTTCACAACAACCACCACCACCATCACCTGAACCCTCTCACTCGCACACTCCCGTTCGTCCTTTGCCGCGTTTCTGCTGTTCAATTCCTCGCCGATCCCCTCTCCGACGAGGTATTTGCTAAGCTCCTCCTAACTCCCATAGCCGCCGACGATCGTTCCTCCACCACCGGCGAGGATCGACCGCCGGAGGAACCGGATTCCATTGGCGGGGACAAGGTCTCCTCGTTTGCAAAGATTCTAACACCGTCCGACGCCAATAACGGTGGCGGTTTCTCCGTTCCGAGGTTCTGCGCGGACTCCATCTTCCCGCCGCTCGACTACACCGCCGATCCGCCGGTACAGGTTCTCAATGTTACCGACGTTCACGGTGCTACCTGGGACTTCCGTCACATATACCGTGGGACTCCCCGGCGGCACCTCCTGACAACCGGTTGGAGCAAGTTCGTGAACCACAAGAAGCTCGTCGCCGGTGACTCCGTCGTGTTCATGAAAAATTCCCAGGGCTCCTTGTTTGTCGGCATTCGGCGTACCTTGAGATTCTCTGCCGTGATGGCCGAGAATCGAGACCAGTGGCTGGAGGAAGAGGAGGAAGAGGAGAACAGCAATGATCCTCCGGTGTTTACTAGGGATGGAAAGGGGAAAGTGACTGTGAAGGCGGTGGCGGAGGCTGCAGAATTGGCGGTGAGGGCCATGCCGTTTGAGGTGGTTTATTATCCAAGGGCTGGGTGGTCGGATTTCGTTGTTAAGTCCGAGGCTGTAGAGGGAGCAATGAAGGCGGGTTGGTGTCCTGGAATGAGAGTGAAAATGGCTGTGGAGACTGAGGATTCTTCTAGAATGACTTGGTTTCAGGGGACTGTGTCTTCGGCCTCGGCTCCTGATAATGGGCCTTGGAGGGGTTCTCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGTCCTGCAGAATTCGAAGCGAATTAGTCCTTGGCAGGTGGAAATTATTTCAACCACACCTTCACTCCATACGGTGTTTCCCCCCACAAAAAGGTTTAGAGCTGGGGCATTAAGTGATCTAGAAGGAGACCCTTACTTCCCTATAACAGGGTTCACTAACTCAACAATGGAACACATGAGTCAAACATTGTTGGGTTATAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTCCATCAAGTTTTTCTAACTTTTTAAATGGTAACTCTCATCTGCATATGGGTAGCAGTTTCTTTGGGAAGACTACAGAGCCTATGTTAAGTACTGTGTCAACAGAGCTAAACATTGGCAACTGCCAATCTGGCGACTTCTCGCCAGATAGCCCAAGTAGTTTGCGTTCATTTGGCCCAGAGTTTACTGGGACCAACAACAGCAACGTCCCGAAAATTGGTTCTGGTTCATTTCTGCTGTTTGGTAAGATCATAAAACCTGTTGAAGTTGAGTTGCATGATGCTGGTTGCATTGCAGATGATGGCTGTAAGAGCAGCACTGAAACTGAATGCATTGACAAGCCAGTGGATCATTCTTTGACTTACTCAACATTGCTCAGGCTTGATGTAGAAAGCCAACAACCCTCACCTGTTGAAGCATGTTATCTGTGA 1773 0.5212 MPPSQPRRLPPKAASLDPKIWRACAGAAVHIPALHSRVYYFPEGHLEQAFPPSLHNNHHHHHLNPLTRTLPFVLCRVSAVQFLADPLSDEVFAKLLLTPIAADDRSSTTGEDRPPEEPDSIGGDKVSSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYTADPPVQVLNVTDVHGATWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFMKNSQGSLFVGIRRTLRFSAVMAENRDQWLEEEEEEENSNDPPVFTRDGKGKVTVKAVAEAAELAVRAMPFEVVYYPRAGWSDFVVKSEAVEGAMKAGWCPGMRVKMAVETEDSSRMTWFQGTVSSASAPDNGPWRGSPWRMLQVTWDEPEVLQNSKRISPWQVEIISTTPSLHTVFPPTKRFRAGALSDLEGDPYFPITGFTNSTMEHMSQTLLGYNTFPAGMQGARHDLFSPSSFSNFLNGNSHLHMGSSFFGKTTEPMLSTVSTELNIGNCQSGDFSPDSPSSLRSFGPEFTGTNNSNVPKIGSGSFLLFGKIIKPVEVELHDAGCIADDGCKSSTETECIDKPVDHSLTYSTLLRLDVESQQPSPVEACYL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122071g00001 590 Gene3D - 314 387 - -
Stsc122071g00001 590 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Stsc122071g00001 590 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc122071g00001 590 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 491 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc122071g00001 590 Gene3D - 126 231 IPR015300 -
Stsc122071g00001 590 MobiDBLite consensus disorder prediction 104 124 - -
Stsc122071g00001 590 CDD B3_DNA 128 229 IPR003340 GO:0003677
Stsc122071g00001 590 MobiDBLite consensus disorder prediction 106 120 - -
Stsc122071g00001 590 FunFam Auxin response factor 127 231 - -
Stsc122071g00001 590 MobiDBLite consensus disorder prediction 244 263 - -
Stsc122071g00001 590 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677
Stsc122071g00001 590 SUPERFAMILY DNA-binding pseudobarrel domain 125 234 IPR015300 -
Stsc122071g00001 590 SMART B3_2 129 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122071g00001 Stsc-Chr122071 1618 5979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122071g00001 16 557 B3 DNA Binding Superfamily AT1G77850 48.763 1.19e-174 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc122071g00001 B3 5.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122071g00001 - - aip:107624033 1093.18