Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122028g00003 ATGGCAACAAATAGATTCATATGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAAAACCTACAGTTACATAGAAGAGGACACAATCTACCATGGAAGCTAAGGCAAAGAGCAACAACTGAAGAGGTTATGAAGAAGAGGGTGTATGTGTGCCCTGAGAAAACATGTGTGCACCATAACCCTGCCCGGGCACTTGGAGACTTGACGGGGATAAAGAAACATTACAGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATCAGAAAACATGTGGCACCAGGGAATATAAATGTGATTGTGGAACTATATTCTCCAGGAGGGACAGCTTCATCACACACAGGGCCTTCTGTGATGCATTAACTGAGGAAAACAACAGAGTAAATCAACAAGGATTAACAAATGGGATGCCACAAAACTTGCAAAATGAACAAGTCCCTGATCCTATAGCCACTAATGCATCTGAACTCAACAGCAGCAACAATCCACTTAGAACACTATCACAAGAGATTGTACCTGTGCCATTCAAGTCCATGAGCATTGGTGGGGGCATGTTCTCCCCAACAAGTTCATCATCAGGTACACTATTTGGTGGTCCAAAGAGCATGCACCCTCTTCCTCCCTCTTCTTCAAGCCTTCAACTCAGCTCCAACAACTCTACTGGCTTCAATTACTTCCAAGATAGCAGCAAGAATTTGGGTCTTGTTTCCAGCTCAGCTCACATGTCTGCAACAGCTTTATTGCAGAAAGCAGCTCAAATGGGTGCTGCTGCAAGTAGCAATAACAGCATTAATTCCCCCATGATGCAAAAGCCCTTTGTTACTACCATGGCTGGTCCTGACCAAGTTTCTGGTTCTGCTACTTCAATGCAGCACCATAACCATAACAATCCTTCCTATGATCACTTCAATCCACAGGGTGATCAGTTTTTTCATAAAAGGCAACAAGAAATGCCACTGATATTTGAAGCTAATAACAATAGTAATGATGGGTCAACAATGAATAATGATATGGGAATGCTTAGCACAATGTTCATGGGAAGTGACCACAATACACAAGAGGTTGGTGCTACTGGTTTGGTCCATGAAAGAGACCTTGCAGAAGGAAATAATCAAATGGGGCCACCAAGGTTTGGTGTTAGTAATGACATGACAACAGTTCATGATTTCTTGGGAGTTGGGGGGTCAAATTCAAGAGCTACAGGGAGTTTGCATGATTATCAGAGACATCATCAGCAACAGCAACAACAACAAAGATTAGAGTTAGAAGCATTAAGCCAACAGAGGTTGCCACATATTGATCACTTTCAGCATCACATTCCACAAGAATCAACTATGGAGAAATCTGTTTGGGACATCTGA 1404 0.4231 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRATTEEVMKKRVYVCPEKTCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQQGLTNGMPQNLQNEQVPDPIATNASELNSSNNPLRTLSQEIVPVPFKSMSIGGGMFSPTSSSSGTLFGGPKSMHPLPPSSSSLQLSSNNSTGFNYFQDSSKNLGLVSSSAHMSATALLQKAAQMGAAASSNNSINSPMMQKPFVTTMAGPDQVSGSATSMQHHNHNNPSYDHFNPQGDQFFHKRQQEMPLIFEANNNSNDGSTMNNDMGMLSTMFMGSDHNTQEVGATGLVHERDLAEGNNQMGPPRFGVSNDMTTVHDFLGVGGSNSRATGSLHDYQRHHQQQQQQQRLELEALSQQRLPHIDHFQHHIPQESTMEKSVWDI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122028g00003 467 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Stsc122028g00003 467 MobiDBLite consensus disorder prediction 204 229 - -
Stsc122028g00003 467 SMART c2h2final6 84 104 IPR013087 -
Stsc122028g00003 467 SMART c2h2final6 49 79 IPR013087 -
Stsc122028g00003 467 SMART c2h2final6 6 28 IPR013087 -
Stsc122028g00003 467 FunFam Zinc finger protein MAGPIE 2 29 - -
Stsc122028g00003 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 430 IPR031140 -
Stsc122028g00003 467 SUPERFAMILY beta-beta-alpha zinc fingers 5 105 IPR036236 -
Stsc122028g00003 467 Gene3D Classic Zinc Finger 62 142 - -
Stsc122028g00003 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Stsc122028g00003 467 MobiDBLite consensus disorder prediction 295 318 - -
Stsc122028g00003 467 FunFam protein indeterminate-domain 5, chloroplastic-like 62 141 - -
Stsc122028g00003 467 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Stsc122028g00003 467 MobiDBLite consensus disorder prediction 295 321 - -
Stsc122028g00003 467 MobiDBLite consensus disorder prediction 411 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122028g00003 Stsc-Chr122028 12968 15971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122028g00003 1 273 IDZ Gene Family AT3G50700 53.115 3.39e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc122028g00003 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122028g00003 - - ahf:112730641 812.757