Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc122027g00002 ATGGCACCCAGGGACCTACCCGCTGTTCTTTCCGGATCCAACCCGATCCAACAACTCTCCAGAGAGATCCGATACAGAGGAGTCAGGAAGAGGCCATGGGGCCGTTACGCCGCTGAGATCCGCGATCCCGGCAAGAAGACACGCGTTTGGCTCGGCACTTTCGACACCGCGGAAGAGGCTGCACGTGCCTATGACAGCGCAGCACGTGAGTTCCGCGGACCCAAGGCAAAGACCAATTTTCCCACTCCGTCCGAGCTCATTAACAGCGCCGCCGCGCGTAGTCCCAGCCAGAGCAGTGCTCTCGACTCTTCCTCTCCTCCGCCGCCGGCGCTCGACCTCACACTCTCCCCCTTCGCCGCCTCTGCCGCCACAAGGATGGTGTTTCCGGTGGCTCGCCCGGTTATGTACTTTGAAGCGTTCGCTCGTGCTGAGATGTACGGGTTTGACCGCCCCGTTTCCGATTTCCGACGCGCCGCCGTTGCCGCCGCCGGAGCAGCGCAAAGCGATTCCGATTCGTCATCCGTCGTGGACTATGAACGTGTGCCTCATCGGAGACTGTTGGATCTTGACCTCAACGTTCCTCCTCCCTCTGAGGTAGCCTGCTCTGGCGGTGAACCGCTTTTTCAAGAACCGCCGTCGTTTTCTTGCCGCTCTTACTAG 660 0.6061 MAPRDLPAVLSGSNPIQQLSREIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDSAAREFRGPKAKTNFPTPSELINSAAARSPSQSSALDSSSPPPPALDLTLSPFAASAATRMVFPVARPVMYFEAFARAEMYGFDRPVSDFRRAAVAAAGAAQSDSDSSSVVDYERVPHRRLLDLDLNVPPPSEVACSGGEPLFQEPPSFSCRSY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc122027g00002 219 MobiDBLite consensus disorder prediction 89 105 - -
Stsc122027g00002 219 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Stsc122027g00002 219 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Stsc122027g00002 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 179 - -
Stsc122027g00002 219 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Stsc122027g00002 219 MobiDBLite consensus disorder prediction 89 108 - -
Stsc122027g00002 219 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Stsc122027g00002 219 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Stsc122027g00002 219 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Stsc122027g00002 219 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Stsc122027g00002 219 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Stsc122027g00002 219 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc122027g00002 Stsc-Chr122027 9394 10053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc122027g00002 13 138 AP2-EREBP Transcription Factor Family AT3G15210 58.451 6.35e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc122027g00002 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc122027g00002 K09286 - gmx:100785455 215.312