Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121g00001 ATGGATGGCAAATGGTTCATGATGGAAAGAGAGAACTACTCGATCTTTGTCGATAACTTACCAACTCATATCTCAAAGAGGTTTTTATACAGAGAGTTCAGTTTTCATGGTAACGTGGTGGACGTCTTCATATCAAGGAAATCAAGAAAGGGGAAGGTTAATATGTTTGCCTTTATCAGGTATGACTCAAAGGGTGGCGCTATGAGAGCAATTGAAAAACTAGATAGGTCATACATTCCGGGGAAAGTGATGACAGTGAAGGAGGCGAAATATCGGAGAAATGTGAAGGTGGACAGGGGAGATAAGGATTCGGTGAAGAGGTGGATGAGAAAACCCTCCAATGAGTACCCAACAATGGGGAATCAGAAGGAGGATTCAGAACAGAGAGCATCACTAATGAAGCAGCAAACAAAGGAAAGAAGAGTGATGGAGGTCATGGTGTCAGAAGAACAGAAAGAGATGCTTGACAAAAGCATTCTCGCTGAATCATTTGAGCCCATTAAATTTGGTTTAGTGGTGGATCAATTGAACAAGATCGAGGAGCAATATGGAAAAGTGGAATATAGGGATCTCGGACCCAAGAAGTGTATCCTGTCGTTGGATAGTATCAAACTTCGGAATAGAGCTCTAGCAGATGCAATATTTACAGAGATGTTCGATGAAGTTAGGGAGTATTGGGGGTTCAAGTGGGCATTTTCAAGAAGAGTGTGGATAGAGTTGATGGGGCTACCAATCCATGTGTGGAGCAAGGATACGTTGGAAAGAATGGCAAAAGGACTGGATGCAAAATTGGAGGTGGGAGAAGAGGTGCTAAGTAGGCAAGTGCACCCTGATGGGTTCTCAGCGGATGGGACGGTGGTGGGAAATTCTTTGTCCCCATCTACGGCGTTCATCCATGGAGAACCTGACAGAAATCACGAAGAGGAAGTGATGAGTCGTGGAGAAGAGGGTGACAATAGAGCCGTTGGAGCCGAAATTACAATTGAGGAGTGCATGAAACGAGGATTGGGGTGCATGAAGGTTAGCATGCGCATGCAGAGTATTGTCGACAATGAATTAATGAGCGGGAAGAGTAGTGAGAATGTGAGGGAGGGAGTTGGACCCGGTGCTGATGATCCAGAAATAAGGGATGACTTGGTGCTCTTTGGTGGCCCAAACACTTGTGTTGACCAAAAATATGATAAAGATGGTAGAAGTCTTTGTGAACCAAGTGGGCTGCTGGAGGAGGAGAGGTATGGTTCGAACGACTTTTCTTGCCCATTTCCACCTGGCTTTGGACCGTGTGGTAATGGACCTCACATCCATAGGGATCTTGAAGCGGGTCAGCGGCATAATGAAGCGGGCATGGAGGCGGGTAATAGACATGAGGAGGATGAGAACCCTAACATGAATAGGATCAGTAACAAAGATGACATAGATGTTACGCACATTCCAGAGACGAACGAAGAAAGAGCAGAGGCGTTAGAAACAAGGCGTGTCTGTGAAGAAGGGGGGCTACTCTTGCAACACGAGATGGAAGATGTCTTCTTGAGAGATCTGGTCAGAGACAAGGAACGAGTGGAAAACACAAAAGGGGGAAAGTAG 1584 0.4564 MDGKWFMMERENYSIFVDNLPTHISKRFLYREFSFHGNVVDVFISRKSRKGKVNMFAFIRYDSKGGAMRAIEKLDRSYIPGKVMTVKEAKYRRNVKVDRGDKDSVKRWMRKPSNEYPTMGNQKEDSEQRASLMKQQTKERRVMEVMVSEEQKEMLDKSILAESFEPIKFGLVVDQLNKIEEQYGKVEYRDLGPKKCILSLDSIKLRNRALADAIFTEMFDEVREYWGFKWAFSRRVWIELMGLPIHVWSKDTLERMAKGLDAKLEVGEEVLSRQVHPDGFSADGTVVGNSLSPSTAFIHGEPDRNHEEEVMSRGEEGDNRAVGAEITIEECMKRGLGCMKVSMRMQSIVDNELMSGKSSENVREGVGPGADDPEIRDDLVLFGGPNTCVDQKYDKDGRSLCEPSGLLEEERYGSNDFSCPFPPGFGPCGNGPHIHRDLEAGQRHNEAGMEAGNRHEEDENPNMNRISNKDDIDVTHIPETNEERAEALETRRVCEEGGLLLQHEMEDVFLRDLVRDKERVENTKGGK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121g00001 527 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 7 122 - -
Stsc121g00001 527 SMART rrm1_1 14 87 IPR000504 GO:0003723
Stsc121g00001 527 MobiDBLite consensus disorder prediction 446 469 - -
Stsc121g00001 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 84 IPR000504 GO:0003723
Stsc121g00001 527 CDD RRM_SF 15 87 - -
Stsc121g00001 527 Gene3D - 7 144 IPR012677 -
Stsc121g00001 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Stsc121g00001 527 SUPERFAMILY RNA-binding domain, RBD 9 96 IPR035979 GO:0003676
Stsc121g00001 527 MobiDBLite consensus disorder prediction 354 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121g00001 Stsc-Chr121 11871 13592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121g00001 14 97 Eukaryotic Initiation Factors Gene Family AT3G16380 30.682 7.62e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121g00001 K12891 - ahf:112794598 163.31