Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121993g00001 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGTGAAGCTAGCGTCTCTTCCTCTGGCAATCAGATAGTACCTCTGAAATCAGCCACCAAGAAAAAGCGTAACCTACCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACGCTATTGGCGACGAATCGATTCGTGTGCGAAATCTGCAACAAGGGTTTCCAGAGGGATCAGAATCTTCAGCTCCATCGAAGGGGTCACAACCTTCCATGGAAGCTGAGGCAGAGGTCGAGTAAGGAGGTGAAGAAGAGGGTGTACGTGTGCCCTGAGCCAACGTGCGTTCACCACGATCCTTCACGAGCACTCGGGGATCTCACCGGAATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCTAAGAAATACGCTGTTCAATCCGATTGGAAGGCTCACTCTAAGATTTGCGGCACTAGAGAGTACAAATGCGATTGTGGAACTTTGTTCTCAAGGAGGGATAGCTTCATCACGCATAGAGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCTAGATCTCAGCCTAATTCACAAACTACACAGTCTCAGATTGGGGTTAAGGTTACTTCTGAATCAGATTCTAAGGCTGTTATGGCTGATTCTTCATCTCCTCAGGAGACACCTCCACCTCCACCACCTGCTCCTGCTCCTCCACCGCCGCCCCCTCCTCCGGTTCAGCCGCCAGCTCCCCCACTCCCGGTTACTACTAAGGCAAACAGTGTTGTTGTGCCACCGGTTTTGAAGACTCAGAATCCAGAGTTGCCAGAAAAATCCCCACAAATCATAGAGGAGCCACAAGCTAACACTGCTCTGAATGGGAGCTGTAGCAGCAGCACTAGCTCAACTAGCAATGGTGGAACTAGCAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACTGCATCAGGTAACCTGCAATCCCAAACACCACCAGCATTTACCGACCTCGTCAGGGCCATGGGGCACCCTGATCATCCAACAGATCTCCCGGGGCCATCATCCTCGGAGCCCATTTCTCTGTGCCTTGCCACTAATCATGGCTCGTCAATATTTGGAACAGGAGGGCAGGAACGCCGCCAGTATGCACAACCACCACAGCCAACCATGTCCGCCACTGCTTTGCTGCAGAAAGCAGCTCAAATGGGTGCGGCTGCAACCAATGCCTCACTGCTTCGTGGTTTAGGTATAGTGTCCTCTTCTTCATCTTCACCAGCTCAGCAAGATAGCTTACAATGGGGTCAGCAGCCCGCTGAACCAGAGAATGCCTCAGTTCCTGCGGGGCTTGGACTTGGGTTGTCTTTTGACAGCGGCTCTGGACTAACGGAATTAATGATGGGGACTCCTTCCATGTTTGGTCCAAAGCATACCACCCTTGATTTTCTAGGATTGGGGATGGCTGCCGGGGGCACCCCTGGTGGAGGTTTGTCGGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTAGTGCTGCAGCGGCGGCATCTTTTGGAAATGGAGAGTTCTCTGGCAAAGACATTGGGAGGAGCTCATGA 1599 0.5141 MPVDLDNVSTASGEASVSSSGNQIVPLKSATKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPNSQTTQSQIGVKVTSESDSKAVMADSSSPQETPPPPPPAPAPPPPPPPPVQPPAPPLPVTTKANSVVVPPVLKTQNPELPEKSPQIIEEPQANTALNGSCSSSTSSTSNGGTSSSVFASLFASSTASGNLQSQTPPAFTDLVRAMGHPDHPTDLPGPSSSEPISLCLATNHGSSIFGTGGQERRQYAQPPQPTMSATALLQKAAQMGAAATNASLLRGLGIVSSSSSSPAQQDSLQWGQQPAEPENASVPAGLGLGLSFDSGSGLTELMMGTPSMFGPKHTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVSAAAAASFGNGEFSGKDIGRSS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121993g00001 532 Gene3D Classic Zinc Finger 115 195 - -
Stsc121993g00001 532 MobiDBLite consensus disorder prediction 419 450 - -
Stsc121993g00001 532 Gene3D Classic Zinc Finger 41 107 - -
Stsc121993g00001 532 MobiDBLite consensus disorder prediction 419 440 - -
Stsc121993g00001 532 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Stsc121993g00001 532 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Stsc121993g00001 532 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 491 IPR031140 -
Stsc121993g00001 532 FunFam protein indeterminate-domain 12-like 40 108 - -
Stsc121993g00001 532 MobiDBLite consensus disorder prediction 192 225 - -
Stsc121993g00001 532 MobiDBLite consensus disorder prediction 191 258 - -
Stsc121993g00001 532 SMART c2h2final6 102 132 IPR013087 -
Stsc121993g00001 532 SMART c2h2final6 61 83 IPR013087 -
Stsc121993g00001 532 SMART c2h2final6 137 157 IPR013087 -
Stsc121993g00001 532 MobiDBLite consensus disorder prediction 9 29 - -
Stsc121993g00001 532 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Stsc121993g00001 532 MobiDBLite consensus disorder prediction 226 256 - -
Stsc121993g00001 532 MobiDBLite consensus disorder prediction 289 309 - -
Stsc121993g00001 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Stsc121993g00001 532 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121993g00001 Stsc-Chr121993 5562 9193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121993g00001 1 532 IDZ Gene Family AT5G66730 58.899 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc121993g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121993g00001 K25869 - gmx:100806404 755.747