Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121978g00001 ATGGATCATCATCAGGGTCAGTGTTTGATGATGTGGAGTAAGAGGAAGTACTCTACTATTCCAAGAACAAACAACACTACTTACCTTTCTTCTTCTTCTTTTTCTTCTGCTGCTGCTTCCTGCTATGAAGTTGAAGAATCATGGGAAGAGAAAGCTTTTGCAAAAGATGCAGCTGGTTACATATGGCCACCAAGATCATATTCTTGCAGCTTCTGTAGAAGAGAGTTCAGATCGGCTCAAGCTCTTGGTGGACACATGAATGTTCATAGAAGAGATAGGGCAAGATTAAAGCAGCAGCAGCACCAACCATCAAGCCCCACCATTAATCATGATCAAGATAATAATACTATTGATGATTATGATGTTGTTCTTGAACCTCATCATCATCCAGGTCAAAATAATTCTAATTTTGATTATCTTTATAGTAACCCTAATTGTTATTATTATGATCTTAATCCTCCTAAGTATGGTGCATCTTCAGTTAGTAATAACAAGTTGTTCAAAGAGGGAAAAGCAGTGATTCCACTTCTTAATTCTTCTATTTTCCATGGATGCCTTAAGAGGAGTAGTAGTACTAATAGTAAGAGTATTATTGTTTCTCCTCATCATCATAATTTGGAAACTTTATGTGATGATGAAGAGAAAAGTGATGATGATGATGGGGGTGTGAGATTAAGCTTGTTTGTTCATAGAGCTAAAGAGGAAGAAGATATAAGTTCTTTCAAGAAGAGAAAAACAGATGATTCGTTGATCCCAAAATCAAGTTCAACAGTTGATGTTAATCATCATAATCATGTACAATCACACAAGTTTCATGAATTTAGTAGCCCTAACTTCATTGAAGAGATGGATCTGGAGCTGAGACTTGGTTATAGTAGTTCCCAGGTATATAGTAGCAAATAA 903 0.3599 MDHHQGQCLMMWSKRKYSTIPRTNNTTYLSSSSFSSAAASCYEVEESWEEKAFAKDAAGYIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQQHQPSSPTINHDQDNNTIDDYDVVLEPHHHPGQNNSNFDYLYSNPNCYYYDLNPPKYGASSVSNNKLFKEGKAVIPLLNSSIFHGCLKRSSSTNSKSIIVSPHHHNLETLCDDEEKSDDDDGGVRLSLFVHRAKEEEDISSFKKRKTDDSLIPKSSSTVDVNHHNHVQSHKFHEFSSPNFIEEMDLELRLGYSSSQVYSSK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121978g00001 300 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Stsc121978g00001 300 Pfam C2H2-type zinc finger 67 91 - -
Stsc121978g00001 300 MobiDBLite consensus disorder prediction 99 113 - -
Stsc121978g00001 300 SUPERFAMILY beta-beta-alpha zinc fingers 64 93 IPR036236 -
Stsc121978g00001 300 MobiDBLite consensus disorder prediction 91 115 - -
Stsc121978g00001 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Stsc121978g00001 300 SMART c2h2final6 67 89 IPR013087 -
Stsc121978g00001 300 Gene3D Classic Zinc Finger 64 121 - -
Stsc121978g00001 300 PANTHER OS07G0101800 PROTEIN 45 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121978g00001 Stsc-Chr121978 17707 18908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121978g00001 5 105 C2H2 Transcription Factor Family AT5G06070 49.541 6.63e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121978g00001 - - aip:107637911 375.941