Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121974g00001 ATGGCTCAGGTTCAAGTTCCGCCTCAGAATGCGATTGCGGGTCCCAACGGAGGAGCAGCTGGTGGTGCTGCTGGAAACCAGTTCGTGACGACGTCGCTTTACGTCGGGGATCTGGACCCGACCGTGACAGAGTCGCAGCTGTATGACTTGTTCAACCAATTGGGTCAGGTTGTGTCCGTTAGGGTTTGCACCGACCTCACCAGCCGCAGATCGCTCGGTTACGGTTATGTCAATTACAGCAACCCACAAGATGCTGCCAGAGCACTGGATGTTCTGAACTTCACTCCTCTGAATAACAAGCCTATCCGCATTATGTATTCACATCGTGATCCCAGTATTCGTAAAAGTGGTGCTGGAAACATATTTATTAAGAATTTGGACAAGGCAATTGACCACAAGGCATTGCATGATACATTTTCTTCTTTTGGGAATATCCTTTCCTGCAAGGTTGCTACAGACTCATCTGGCCAGTCAAAAGGGTATGGGTTTGTGCAATTTGATACTGAAGAAGCTGCTCAGAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCGTTCCTTCGCAAGCAAGAGAGAGAAACTGCCACTGACAAGGTAAAATTTAACAATGTGTTTGTGAAGAACCTATCTGAGTCAACCACGGATGAGGATTTGAACAAGGTTTTTGGTGAATATGGGACCATTACCAGTGCTGTTGTGATGAGGGATGGTGATGGGAAATCCAAGTGCTTTGGATTTGTTAACTTTGAGAATCCTGAAGATGCTGCTAGGGCTGTTGAAGCACTTAATGGCAAAAAATTTGATGACAAGGAATGGTATGTTGGAAAAGCACAAAAGAAATCTGAAAGGGAGCATGAGCTGAAACAAAAGTTTGAGCAGAGCATGAAAGAAGCTGCTGACAAATACCAAGGGGCAAACTTGTACATCAAAAACTTAGATGATACCATCGGAGATGATAAACTTAAGGAGCTGTTCTCTCCTTTTGGTACCATTACCTCTTGCAAGGTTATGAGGGACCCCAATGGCATCAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTCCCGAGGAGGCCTCTAGAGCTCTCTTGGAGATGAATGGAAAAATGGTGGTAAGCAAACCCCTCTATGTCACTCTTGCCCAGCGGAAGGAAGATAGAAGAGCTAGATTACAGGCTCAGTTTGCTCAAATGCGACCCATTGCAATGGGACCCACCGTTGGTCCTCGGGTGCCAATGTATCCCCCTGGTGGTCCAGGTATTGGTCAACAAATATTCTATGGTCAGGGCCCTCCTGCCATCATTCCTTCCCAGCCTGGGTTTGGCTATCAACAACAACTTGTGCCTGGTATGAGGCCTGGTGGGGCTCCTGTTCCAAATTTCTTCGTGCCAATGGTTCAGCAAGGACAGCAGGGGCAGCGTCCTGGAGGAAGACGTGCAGGTGGAGTCCAGCAGTCTCAGCATCCAGTCCCACTGATGTCGCCTCAGATGCTTCCTAGGGGACGTATGTATCGTTATCCACCCGGCGGTAGGGTTCCTGATGTTCCCATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATGTGGGCGGGATGCCTATGCGTGATGCAACAATCTCCCAGCAAATTCCCATTGGGGCTTTGGCTACTGCACTGGCAAATGCTTCTCCAGAGCAGCAGAGAACGATGCTGGGTGAAAATCTCTACCCTCTCGTGGAACAGTTGGAGCCTGATAACGCTGCCAAGGTGACAGGAATGCTCCTGGAGATGGACCAGACTGAGGTTCTGCACTTGCTCGAGTCACCAGAAGCCCTGAAGGCAAAGGTGGCTGAGGCAATGGATGTCTTAAGGAATGTTGCACAACAGCAGCAGACTGGCGGTGCAGCTGACCAGCTTGCTTCCTTATCACTCAATGACAACCTTGTTTCTTGA 1959 0.4865 MAQVQVPPQNAIAGPNGGAAGGAAGNQFVTTSLYVGDLDPTVTESQLYDLFNQLGQVVSVRVCTDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVATDSSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERETATDKVKFNNVFVKNLSESTTDEDLNKVFGEYGTITSAVVMRDGDGKSKCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYIKNLDDTIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPIAMGPTVGPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRAGGVQQSQHPVPLMSPQMLPRGRMYRYPPGGRVPDVPMPGVAGGMFSVPYDVGGMPMRDATISQQIPIGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQTGGAADQLASLSLNDNLVS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121974g00001 652 CDD RRM4_I_PABPs 312 390 - -
Stsc121974g00001 652 SMART poly_2 565 628 IPR002004 GO:0003723
Stsc121974g00001 652 CDD RRM2_I_PABPs 117 193 IPR045305 -
Stsc121974g00001 652 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 626 IPR006515 GO:0003723
Stsc121974g00001 652 Gene3D - 120 192 IPR012677 -
Stsc121974g00001 652 FunFam Polyadenylate-binding protein 117 200 - -
Stsc121974g00001 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Stsc121974g00001 652 FunFam Polyadenylate-binding protein 201 295 - -
Stsc121974g00001 652 CDD RRM1_I_PABPs 32 111 IPR034364 -
Stsc121974g00001 652 Gene3D - 24 119 IPR012677 -
Stsc121974g00001 652 CDD RRM3_I_PABPs 209 288 - -
Stsc121974g00001 652 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Stsc121974g00001 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Stsc121974g00001 652 PANTHER RNA BINDING PROTEIN 30 93 - -
Stsc121974g00001 652 Gene3D - 194 295 IPR012677 -
Stsc121974g00001 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Stsc121974g00001 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Stsc121974g00001 652 SMART rrm2_1 314 386 IPR003954 GO:0003676
Stsc121974g00001 652 SMART rrm2_1 32 105 IPR003954 GO:0003676
Stsc121974g00001 652 SMART rrm2_1 120 192 IPR003954 GO:0003676
Stsc121974g00001 652 SMART rrm2_1 211 283 IPR003954 GO:0003676
Stsc121974g00001 652 Gene3D - 296 398 IPR012677 -
Stsc121974g00001 652 SUPERFAMILY PABC (PABP) domain 494 646 IPR036053 GO:0003723
Stsc121974g00001 652 SMART rrm1_1 32 105 IPR000504 GO:0003723
Stsc121974g00001 652 SMART rrm1_1 314 386 IPR000504 GO:0003723
Stsc121974g00001 652 SMART rrm1_1 120 192 IPR000504 GO:0003723
Stsc121974g00001 652 SMART rrm1_1 211 283 IPR000504 GO:0003723
Stsc121974g00001 652 MobiDBLite consensus disorder prediction 475 507 - -
Stsc121974g00001 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Stsc121974g00001 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Stsc121974g00001 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Stsc121974g00001 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Stsc121974g00001 652 Gene3D - 549 632 - -
Stsc121974g00001 652 FunFam Polyadenylate-binding protein 296 401 - -
Stsc121974g00001 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723
Stsc121974g00001 652 FunFam Polyadenylate-binding protein 18 116 - -
Stsc121974g00001 652 FunFam Polyadenylate-binding protein 549 631 - -
Stsc121974g00001 652 SUPERFAMILY RNA-binding domain, RBD 210 394 IPR035979 GO:0003676
Stsc121974g00001 652 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121974g00001 Stsc-Chr121974 2363 7666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121974g00001 30 651 Eukaryotic Initiation Factors Gene Family AT1G49760 75.829 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121974g00001 K13126 - gmx:100813735 1129.39