Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121971g00004 ATGCCAATTAGATACTCCTTCAAGGAAATCAAGAACATAACTGCAGCATTCAACACAAAACTGGGGAATGGAGGCTATGGCTCTGTCTTTCAAGGAAAACTCCGAAGTGGTCGCTCTGTTGCTGTCAAGTTGTTGAATAAGGATAAATCCAATGGCCAAGAATTCATCAATGAAGTTGCTACTATTGGCAGAATTCACCATGTTAATGTAGTGCAACGCATTGGTTTCTGCATACAAGGATCAAAACGTGCTCTCGTCTATGAATTGATGGAAAATGGCTCTTTAGAAAAACATATATTTTCCCATCAAGGGAACGCTTCATTAAGTTGTGAAAATCTCTACACCATTTCTCTTGGAATCGCACGTGGTATTGAATACTTGCATAATGGGTGTGACATGAAGATTCTGCATTTTGACATCAAGCCTCACAACATTCTTTTGGATGAGAATTTCAATCCAAAAGTGTCTGATTTTGGACTAGCAAGGCTGTATCCCACTGATGCAAGCATTGTGTCTCTGACCGCAGCCAGAGGAACCATAGGCTACATGGCTCCTGAGCTCTTTTATAGAAACATTGGCGCAATCTCATACAAAGCCGATGTTTATAGCTTTGGGAAGTTGTTGATGGAAATGGCCAGCAGAAGGAAGAACTGGAATGCCTTGACTGAAAATTCCAGTTCAAGCCAAGGGTATTTCCCCTTTTGGGTTTATGATCAATTGCATGATGGAAGGGAAATCACAATAGAAAATGACACAGATGAGGAGATGAAGTTGGCAAAGAAAATGATGATAGTGGCATTGTGGTGTATACAGACAAAGCCTAATGATCGGCCTTCAATGAAGAGAGTAGTGGAGATGCTGACACAAGATGATGACTTAGCAATGCCTCCAAAACCATACTTCTACCCACTTGATGCACCCACAGAAGACAATGTTGAAGATACTACAACCCCTAGCAGTTCAAAGTTATCCTTTGAGATCTGGTCAGCTAGTGATTCAAAGGAATAG 1008 0.4107 MPIRYSFKEIKNITAAFNTKLGNGGYGSVFQGKLRSGRSVAVKLLNKDKSNGQEFINEVATIGRIHHVNVVQRIGFCIQGSKRALVYELMENGSLEKHIFSHQGNASLSCENLYTISLGIARGIEYLHNGCDMKILHFDIKPHNILLDENFNPKVSDFGLARLYPTDASIVSLTAARGTIGYMAPELFYRNIGAISYKADVYSFGKLLMEMASRRKNWNALTENSSSSQGYFPFWVYDQLHDGREITIENDTDEEMKLAKKMMIVALWCIQTKPNDRPSMKRVVEMLTQDDDLAMPPKPYFYPLDAPTEDNVEDTTTPSSSKLSFEIWSASDSKE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121971g00004 335 MobiDBLite consensus disorder prediction 310 328 - -
Stsc121971g00004 335 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Stsc121971g00004 335 FunFam PR5-like receptor kinase 90 297 - -
Stsc121971g00004 335 Gene3D Transferase(Phosphotransferase) domain 1 90 295 - -
Stsc121971g00004 335 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Stsc121971g00004 335 MobiDBLite consensus disorder prediction 304 335 - -
Stsc121971g00004 335 ProSiteProfiles Protein kinase domain profile. 15 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121971g00004 335 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 310 IPR045874 GO:0004672
Stsc121971g00004 335 PIRSF ILK 6 293 - -
Stsc121971g00004 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Stsc121971g00004 335 SMART serkin_6 15 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121971g00004 335 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Stsc121971g00004 335 SUPERFAMILY Protein kinase-like (PK-like) 16 287 IPR011009 -
Stsc121971g00004 335 Pfam Protein kinase domain 18 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121971g00004 Stsc-Chr121971 17130 18137 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121971g00004 4 320 Receptor kinase-like Gene Family AT5G38280 47.975 2.62e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc121971g00004 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121971g00004 - - aip:107607706 573.548