Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121971g00002 ATGCCAATTAGATACTCCTACAAGGAAATCAAGAAGATAACTAGATCATTCAACACAAAACTGGGGAATGGAGGCTATGGCTCTGTCTTTCAAGGAAAACTTCAAAGTGGTCGTCCTGTAGCTGTTAAGGTATTGAATAAGGCGAAATCCAATGGTCAGGAATTCATCAATGAAGTTGCTACTATTGGAAGAATTCACCATGTTAATGTAGTGCAACTTATTGGTTTCTGCATACAAGGATCAAAACGTGCTCTCGTCTATGAATTGATGGAAAATGGCTCTTTAGAAAAACATATATTTTCCCATCAAGGGAACGCTTCATTAAGTTGTGAAAATCTCTACACCATTTCTCTTGGAATCGCACGTGGTATTGAATACTTGCATAATGGGTGTGACATGAAGATTCTGCATTTTGACATCAAGCCTCACAATATTCTTTTGGATGACAACTTCAATCCAAAAGTCTCTGATTTTGGACTTGCAAGGCTGTATCCCACTGATGCCAGCATTGTGTCTCTGACTGCAGCAAGAGGAACCATAGGGTACATGGCCCCCCAGCTCTTCTACAGAAATGTTGGCGCAATCTCATACAAAGCTGATGTCTATAGCTTTGGGATGTCGTTAATGGAGATGGCCTGTAGACGGAAGAATTTGAATGCAATGACTGAAAATTCTAGCCAAATATATTTTCCCTTTTGGGTTTATGATCAATTGCATGATGGACTGGAAATAACAATAGAGAATGACACAGATGAAGAGATGAAGTTGGCAAAGAAGATGATGATAGTGGCATTGTGGTGCATACAAACAAAGCCTAGTGATCGGCCTTCAATGAAGAGAGTAGTGGAGATGCTGACACAAGATGATGACTTAGAAATGCCTCCAAAGCCATACTTTTATCCACTTGATGCACCTACCACAGAAGAGAATGTTGAAGATATTACAACCTCTAGCAGTTCAAAGTTATCCTTTGAGCTCTGTTCAGTTAGTGATTCAAAGGAATAG 1005 0.397 MPIRYSYKEIKKITRSFNTKLGNGGYGSVFQGKLQSGRPVAVKVLNKAKSNGQEFINEVATIGRIHHVNVVQLIGFCIQGSKRALVYELMENGSLEKHIFSHQGNASLSCENLYTISLGIARGIEYLHNGCDMKILHFDIKPHNILLDDNFNPKVSDFGLARLYPTDASIVSLTAARGTIGYMAPQLFYRNVGAISYKADVYSFGMSLMEMACRRKNLNAMTENSSQIYFPFWVYDQLHDGLEITIENDTDEEMKLAKKMMIVALWCIQTKPSDRPSMKRVVEMLTQDDDLEMPPKPYFYPLDAPTTEENVEDITTSSSSKLSFELCSVSDSKE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121971g00002 334 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Stsc121971g00002 334 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 308 IPR045874 GO:0004672
Stsc121971g00002 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Stsc121971g00002 334 ProSiteProfiles Protein kinase domain profile. 15 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121971g00002 334 SMART serkin_6 15 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121971g00002 334 Gene3D Transferase(Phosphotransferase) domain 1 90 293 - -
Stsc121971g00002 334 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Stsc121971g00002 334 PIRSF ILK 5 290 - -
Stsc121971g00002 334 FunFam PR5-like receptor kinase 90 295 - -
Stsc121971g00002 334 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Stsc121971g00002 334 Pfam Protein kinase domain 18 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121971g00002 334 SUPERFAMILY Protein kinase-like (PK-like) 4 285 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121971g00002 Stsc-Chr121971 4327 5331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121971g00002 4 316 Receptor kinase-like Gene Family AT5G38280 50.000 6.87e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc121971g00002 Pkinase 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121971g00002 - - aip:107607706 572.007