Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121971g00001 CCTCACAACATTCTTTTGGATGACAACTTCAATCCAAAAGTCTCTGATTTTGGACTTGCAAGGCTGTATCCCACTGATGCCAGCATTGTGTCTCTGACCGCAGCAAGAGGAACCATAGGCTACATGGCTCCTGAGCTCTTTTACAGAAACGTCGGCGCAATCTCATACAAAGCCGATGTTTATAGCTTTGGGATGTTGTTGATGGAAATGGCCAGCAGAAGGAAGAATTTGAATGCTATGACTGAAAATTCCAGCAAAATATATTTTCCCTTTTGGGTTTTTGATCAATTGCATGATGGGAGGGAAATCACAATAGAAAATGACACAGATGAGGAGATGAAATTGGCAAAGAAAATGATGATAGTGGCATTGTGGTGCATACAGACAAAGCCTAATGATCGGCCTTCAATGAAGAGAGTAGTGGAGATGCTGACACAAGATGATGACTTAGAGATGCCTCCAAAGCCATACTTCTACCCACTTGATGCACCCACAGAAGACAATGTTGAAGATATTACAACCCCTTGCAGTTCAAAGTTATCCTTTGAGATCTGTTCAGTAAGTGATTCAAAGGAATAG 579 0.4162 PHNILLDDNFNPKVSDFGLARLYPTDASIVSLTAARGTIGYMAPELFYRNVGAISYKADVYSFGMLLMEMASRRKNLNAMTENSSKIYFPFWVFDQLHDGREITIENDTDEEMKLAKKMMIVALWCIQTKPNDRPSMKRVVEMLTQDDDLEMPPKPYFYPLDAPTEDNVEDITTPCSSKLSFEICSVSDSKE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121971g00001 192 Gene3D Transferase(Phosphotransferase) domain 1 1 156 - -
Stsc121971g00001 192 SUPERFAMILY Protein kinase-like (PK-like) 1 144 IPR011009 -
Stsc121971g00001 192 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121971g00001 192 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 163 IPR045874 GO:0004672
Stsc121971g00001 192 Pfam Protein kinase domain 1 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121971g00001 Stsc-Chr121971 27 605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121971g00001 1 171 Receptor kinase-like Gene Family AT5G38280 46.023 5.60e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc121971g00001 Pkinase 1.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121971g00001 - - aip:107607706 342.043