Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121942g00001 ATGGATCCTATGGAACCTGGTGGTAGTAGCAATGGTAGCAGCAGCGGAGCAGCTGTTCCACCACCGGCACCGCCACAACAACCACCACACAGCGTTACTAAGTGGTCAACAATAAAGAAACATCTGCATGAGCCTCCGCTTCCGGTGGAGGAACAGTTGCAAGTTTTATGGGAAGCCCACAAGAAAGAAACCAAGAAAAAGAAGCTCGCAATTCCTCTCGGAAGCGTCCTGAGACAAATGAAGGCTGACGATGACGTCAGAAGGGTATCGGACGAGGCGCTGCAGGTCTTCAGCAAGGCCGGTGAGATGTTTGCCCAAGAACTCGCCCTGCGCGCCTGGAAACATACTCAGGATGATAAAAGGATGGACACTATGGAGAAAGATTTCACCGCTGCACGAGCGGATGCTACCATATATGAATTCTTGGACTGTGTTGAAACTGGCCTTGATACTGATACTGAAACTGAAACGGATAGTTCTACTAATGATAGTGAATATCAATGGTGTTAG 510 0.4882 MDPMEPGGSSNGSSSGAAVPPPAPPQQPPHSVTKWSTIKKHLHEPPLPVEEQLQVLWEAHKKETKKKKLAIPLGSVLRQMKADDDVRRVSDEALQVFSKAGEMFAQELALRAWKHTQDDKRMDTMEKDFTAARADATIYEFLDCVETGLDTDTETETDSSTNDSEYQWC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121942g00001 169 MobiDBLite consensus disorder prediction 150 169 - -
Stsc121942g00001 169 MobiDBLite consensus disorder prediction 1 34 - -
Stsc121942g00001 169 SUPERFAMILY Histone-fold 61 142 IPR009072 GO:0046982
Stsc121942g00001 169 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 49 146 - -
Stsc121942g00001 169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 71 121 IPR003958 -
Stsc121942g00001 169 Gene3D Histone, subunit A 37 146 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121942g00001 Stsc-Chr121942 3303 3812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121942g00001 56 142 CCAAT-HAP5 Transcription Factor Family AT1G54830 42.857 1.00e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc121942g00001 CBFD_NFYB_HMF 2.6e-08 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121942g00001 K08066 - nnu:104599550 88.9669