Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121920g00002 ATGGCTGCTCTGATCAGCACAACTTCAACTACACTTCTTCAACACAATCATCATACAATATGCTTTTCTCGTCTGAAATCTACCTCCCCATATACCATTTCCCTCTTAACAAATCGTTTCAAGAGCAACTACATTAACTCCATAAAGTGCAATGCATTCTTGGATAACAACATCATCCCCAAAGAGTTATTGTTGGAGTTGGATTACACACTAGCGAAGTTCCAGACTGTAACTGAAGACTTATCAGGTTTACAAAAATGGGGGTTTCTTGCTTTTGCTGGGCTGGCATGGATTTACTTAACTGCAAGACCTGGTGTTCTTGTTGGAGCCATTGATGCATACCTTATGGCTCCAATTCAAATGGTTTTGGATAGTTTATTTGGATGGAGAAGTCTGAAAGGGAGTGATTTTGTGATTGGAGATAAATTAGGAGAAGGGTCTTTTGGTGTTGTTTATTCAGGTGTTTTGGTCCCAAGGAATGTAAATAATGCAGAAGAGAAGATACAGAAGAGTGGTAATAAGGGGAAGGTAATAACAAAGTTGGATGCAAAATCTAAGGACAAAGTCATTCTCAAGAAGGTGAAAGTTGGAATTGAAGGAGCTAAAGAATTTGGTGAATATGAGGAGTGGTTCAATTACAGGCTCTCCAGAGCAGCTCCAGAAACTTGTGCTAAGTTCCTTGGAAGTTTTGTAGCTGATAAAACCAATTCACTTTTCACGAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGGCCGTTCTCTCGCCGATTACTTGACGGATCGAAACTTCCCTTCGAACTTGGAATCTAAAATGTTTCGACGAGCCTTGCAAGGGATAGACTCGTCGAAAAGAGATGCCTTGATCATCAAGCAAATAATGCGCCAAATGGTTACTTCCCTTAAGAAGATTCATGACACAGGCATTGTTCACAGGGATATAAAGCCTGCCAACTTGGTAGTTACCAAGCAGGGACAGATCAAACTCATTGATTTCGGTTCAGCTACCGATCTGCGAATCGGAAAGAATTATGTTCCCAGTTTTAACCCTTTGGATCCTGACTATTGTCCCCCAGAATTGTATGTGCTACCTGAAGAAACTACTAGTCTTCCACCAGAGCCAATTGCAGCTTTTCTTTCACCAATATTGTGGCAGTTGAAAAGTCCTGATTTATTTGACATGTATTCTGCTGGGATTATACTCTTGCAAATGGCAATACCAACTCTAAGGTCTGCATCTGCTCTGAAGAATTTCAATTTGGAATTAAGGAACTGTGGATACAATCTGAAGACATGGCGAGGCTTTACTCGCGGCCGGTTTGATTTCCAAATCCTCGACGAAGACTCCGGTAGAGGTTGGGACTTAGCAACCAAGCTTATCTCAAAGAGGGATTCCCCGGCCAGCGGACGCTTATCGGCTGCCGCGGCCTTGAGGCATCCTTATTTCCTTCTAGGTGGTGATCAGGCAGCTGTAGTTCTTTCAAAATTAAACTTCAAGGTGATTTGA 1509 0.4201 MAALISTTSTTLLQHNHHTICFSRLKSTSPYTISLLTNRFKSNYINSIKCNAFLDNNIIPKELLLELDYTLAKFQTVTEDLSGLQKWGFLAFAGLAWIYLTARPGVLVGAIDAYLMAPIQMVLDSLFGWRSLKGSDFVIGDKLGEGSFGVVYSGVLVPRNVNNAEEKIQKSGNKGKVITKLDAKSKDKVILKKVKVGIEGAKEFGEYEEWFNYRLSRAAPETCAKFLGSFVADKTNSLFTKGGKWLVWKFEGGRSLADYLTDRNFPSNLESKMFRRALQGIDSSKRDALIIKQIMRQMVTSLKKIHDTGIVHRDIKPANLVVTKQGQIKLIDFGSATDLRIGKNYVPSFNPLDPDYCPPELYVLPEETTSLPPEPIAAFLSPILWQLKSPDLFDMYSAGIILLQMAIPTLRSASALKNFNLELRNCGYNLKTWRGFTRGRFDFQILDEDSGRGWDLATKLISKRDSPASGRLSAAAALRHPYFLLGGDQAAVVLSKLNFKVI 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121920g00002 502 SMART serkin_6 137 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121920g00002 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Stsc121920g00002 502 SUPERFAMILY Protein kinase-like (PK-like) 132 484 IPR011009 -
Stsc121920g00002 502 Pfam Protein kinase domain 171 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121920g00002 502 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 68 500 - -
Stsc121920g00002 502 Gene3D Phosphorylase Kinase; domain 1 128 250 - -
Stsc121920g00002 502 Gene3D Transferase(Phosphotransferase) domain 1 272 485 - -
Stsc121920g00002 502 ProSiteProfiles Protein kinase domain profile. 137 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121920g00002 Stsc-Chr121920 6358 8804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121920g00002 223 355 MAP Kinase Kinase Gene Family AT4G29810 26.812 9.04e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Stsc121920g00002 Pkinase 3.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121920g00002 - - gmx:100795624 717.998