Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121910g00003 ATGCAGCGACCCTTCTATGAACGGTGGAAGATGCTCGAGAAAGAAGTAATTGAACCAAGAAATATAGAAAGGCAACATATTTTCCAGAGCAAGAACCCTTACTACAGATATGACCTGGAACCATTTAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCAGTAAGCTTTTAAAGGAATTCATTAAAAAGCTCTCACACGAGGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCATATGTACCAAGAACTCATGAGGGCCTGTTAAAATGGAAATATGCAGAGCTGAATTCAGTTGATTTTCTCTTTGAGGTTGATGGCGATCACCAGTTACTTTTTCTCTATGAACGTGGAAAGAAGAAACTTATGGATGGGAATAGGGTTGCATTTGGAGGTCTGTCAATTTTTTACTTGATTAATGTTATGCGAAGTATTAAAGACAACATCACCGAGGAGGACTTGTTGAACGAAATAAATGAGATAATTCGCCTTCCCATGTATGCTGACCGTATAAAAGCCGACAGTAAAGCTACTCAGCATGCTAATATGGCAAGGCGAAATCGGTGA 573 0.4031 MQRPFYERWKMLEKEVIEPRNIERQHIFQSKNPYYRYDLEPFRVRRKDFWLLSTVSKLLKEFIKKLSHEADGLIFQGWDDPYVPRTHEGLLKWKYAELNSVDFLFEVDGDHQLLFLYERGKKKLMDGNRVAFGGLSIFYLINVMRSIKDNITEEDLLNEINEIIRLPMYADRIKADSKATQHANMARRNR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121910g00003 190 PANTHER MRNA-CAPPING ENZYME 1 129 - -
Stsc121910g00003 190 Pfam mRNA capping enzyme, catalytic domain 1 94 IPR001339 GO:0004484|GO:0005524|GO:0006370
Stsc121910g00003 190 Gene3D DNA ligase/mRNA capping enzyme 1 94 - -
Stsc121910g00003 190 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 2 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121910g00003 Stsc-Chr121910 17851 20048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121910g00003 1 181 Protein tyrosine phosphatase (PTP) family AT3G09100 61.187 1.09e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121910g00003 K13917 - gmx:100776633 308.916