Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121910g00001 ATGCAGCAAAGGCCATATGATGTATTCTTGAGCTTTCGAGGCAAAGACACTCGTTCAAAGTTCCTCTCACATCTTCATGCATCTCTTCAAAATGCCGGTATCTATGTTTTCAAGGATGATAATGGGCTAGCAAGAGGGAAAAATATCTCAATCTCGCTTATAAAAGCAATTGGAGAGTCTAAAACTTCTGTAATAATTTTGTCACCAAATTATGCTTTCTCAAGATGGTGTTTGCAAGAGTTGGAATACATCATGCGATGTTGTAAAAACAAAACTCAAAATGTGTTGCCAGTATTCTACCATATTGATCCCTCGGAAGTGCGAAATCAAACAGGCAAGTTTGGACAAGCTTTTGATAATCTTATGAAAAGATACCCAGATAAAGTAAAAGGCAAGGAGCAGAGTTGGAGGACAGCCCTCCGTGAAGTTGGATGCCTTGCAGGTTTGGTCATCCGAAAATCCAGGGATGAAAGTGAAGATATTAAGAACATTGTTGAACATGTTACTCATATGCTAGACATGAGGGAGTTGTTTGTTGCTAATCATCCGGTAGGAGTTGAATCTCGTGTTCAAGAAGTGATTGAACTATTAAGAAACCGGCAACAAGAAAATCCTCTTCTACTCGGTATATGGGGCATGGGAGGGAGTGGTAAAACAACCATTGCTAAAGCAATTTATAATAAAATTTTCCGTGAGTTTGAAGGTCGGTGCTTTCTCTTAAATATAAGAGAAGTTTGGGATCAAGATAATGGAATTCTTCATTTACAACAGCAACTTCTTTCTGCTATCTACAAGACAACGAAAATAATGATAGCAAACATTGAATCTGGAAAATCAATATTGGAGAGAAGACTTGGCCAGAAAAAGGTACTTGTTGTACTTGATGATGTGGACAGATTGGAGCAGCTAAATTTTTTAGCCGCAAGTCATAAATGGTTCTGTCCAGGGAGCACAATAATCATCACAACAAGAGATGAACATCTTCTTCGTTATCTTAGAGTTGATAAGTTATATAGTATGAAAGAGTTAAATGACAATGAATCCATGGAACTTTTTAGCTGGCATGCATTCAAAGAGCCATGTCCAAAACAAGAGTTTTCTTTACTTGCTAATGAAGTTGCTACTTATTGTGAGGGATTACCACTTGCTCTTCAGGTGATTGGGTCCTATTTGTTTGATAGGAAAGAATGTGAATGGAAGGATGTTTTGGAAAGACTCAGAACTATTCCAAACAATAAAGTACATGAGAAGCTTAAAATAAGTTTTGAGGGTCTAGATGATGACATGGATAGAGAAATATTTCTTGATGTGGCATTTTTCTTTATTGGAATGGACAAAAATGATTTAGTGGATATATTAAATGGCTGTGGATATTCTGCTGAAATTGGAATAAATATTCTTATAGAACGATGCCTTATTACTGTGGGCACTAAGAGGAAACTTGGCATGCATGGTTTGCTGCGAGACATGGGAAGAGAAATTGTTCGCCAGAGTTTGCCAAAGAAACCTGAGGAACGCAGTAGATTATGGAATCCAGAGGAAGTGCTCAATGTATTATCAAAAGACATGGGAACAAAAGCTATTGAGGGACTTGCTTTGAACCTGCCAAACTCAGTGAATCCAACTCAGTTAAAGACGGAAGCATTTAAGGAGATGAAGAGACTCAGATTGCTTCAGTTTGCAAATGTGCAACTTGTTGGAGACTTCAAATACCTTTCAACTGATCTTCGATGGTTGTGTTGGCGTGGATGTCCTTCACAATATACAACTGCAAACGTTGATCAAGCAAATTTAGTTGCTATGGACTTCAAATATAGCAAACTTAAACTACTATGGAAGAATGGTCAGATGATGAAGCAGTTAAAAATTCTCAACCTCAGTCATTCTCAACACTTGACACAAACTCCTGACTTTTCAAATCTGCCCAATCTTAAAAAGTTAATACTCAAATATTGCCCAAAGTTGACTTCAGTTTCTCATACTATTGAACATCTCAAGCAAGTTCTTCTAATCAATGTGAAAGGGTGTTCAAGCCTTCGTGTACTTCCAAGAAGCATTTACAAGTTGAAATCTGTCAAAACTCTTATTCTTTCAGGATGTCCATTGATTGATAAGTTAGAAGAAGAAATAGAACAGATGGAATCATTGACAACTTTGATGGCTGACAAAACTGCTATCACACAAGTGCCTTATGCACTACTAAGATTAAAGAGCATTGTGTATATTTCTTTGTGTGACTTTCAAGGATTATCGCGCAATGTGTTTCCTTCAATCATTTGGTCATGGACCTCTCCAACAAATAATTTCTCACCACAAGTGCAACCATTGTTGGACTTGTCAAATCTAGTTTCCTTAATAGTTCCAAATGGAAACTCTCAAGGCCTATCATCCATCCCCAGAGGACTTCCACAGGTTCAGAACGTTAGGCTGGAGTGTGGCTCACAACTTCAAATAACAGATGTAGCTTCTGATGCCTTTGTCACAAACTGCAATGATATGATAGTGACATCAAGTGCATCAAATGTCTCAAAAGGGAGTACCTCATCATTCGCTGGTTGTTGCAGCGACCATGACATTATTGAATCAGAAAATTCCTTGAATCCAATTTTAATCCAAATGGGAATGAAATGTTCTGTCACAGAGGTACTTACAGCAAATATTTTCCAGAAATTTAGTGCCAGAGTATCTGGAGATTGTTTGCTTCCAGGCAACAAGCATCCTGATTGGTTAACATTCAGTGGCATAGATTCTTCTGTAACTTTTGATGTCCCTCAAGTGAATGGGCGCAAGTTAAAGACAGTGGTGTTGTGTATAGTCTATTCTTCTTCCCCAAATAATGTACCTTCAGAAGGCCATATTATAAAAAGTCTGTTTATCATAAATCACACAAAGACCACTCCTTATATCTACGATGGAGATACACTAGCTTCACTTAGAGATGAGGAATGGCAGAAAGTAATATCAAACCTTGAGGCTGGTGACAAAGTGCAGATTGTTGTCGTTGTTGGGTTAGGAATCACAGTGAAGAAGACAGCAATTTATCTCATATATGGTGAACCAGTTGACCAAACCACTGAGCAACAAGCTTATGGTATTGTTTCTGGTGATGATATGGTAGCAGATGCAAATCTCACTGTTCAAGTTGGAGATGAAAAAAAAAATTTGAACTCACTTAAAAAGCGAAAATTCCAAAGAGTATGA 3201 0.3774 MQQRPYDVFLSFRGKDTRSKFLSHLHASLQNAGIYVFKDDNGLARGKNISISLIKAIGESKTSVIILSPNYAFSRWCLQELEYIMRCCKNKTQNVLPVFYHIDPSEVRNQTGKFGQAFDNLMKRYPDKVKGKEQSWRTALREVGCLAGLVIRKSRDESEDIKNIVEHVTHMLDMRELFVANHPVGVESRVQEVIELLRNRQQENPLLLGIWGMGGSGKTTIAKAIYNKIFREFEGRCFLLNIREVWDQDNGILHLQQQLLSAIYKTTKIMIANIESGKSILERRLGQKKVLVVLDDVDRLEQLNFLAASHKWFCPGSTIIITTRDEHLLRYLRVDKLYSMKELNDNESMELFSWHAFKEPCPKQEFSLLANEVATYCEGLPLALQVIGSYLFDRKECEWKDVLERLRTIPNNKVHEKLKISFEGLDDDMDREIFLDVAFFFIGMDKNDLVDILNGCGYSAEIGINILIERCLITVGTKRKLGMHGLLRDMGREIVRQSLPKKPEERSRLWNPEEVLNVLSKDMGTKAIEGLALNLPNSVNPTQLKTEAFKEMKRLRLLQFANVQLVGDFKYLSTDLRWLCWRGCPSQYTTANVDQANLVAMDFKYSKLKLLWKNGQMMKQLKILNLSHSQHLTQTPDFSNLPNLKKLILKYCPKLTSVSHTIEHLKQVLLINVKGCSSLRVLPRSIYKLKSVKTLILSGCPLIDKLEEEIEQMESLTTLMADKTAITQVPYALLRLKSIVYISLCDFQGLSRNVFPSIIWSWTSPTNNFSPQVQPLLDLSNLVSLIVPNGNSQGLSSIPRGLPQVQNVRLECGSQLQITDVASDAFVTNCNDMIVTSSASNVSKGSTSSFAGCCSDHDIIESENSLNPILIQMGMKCSVTEVLTANIFQKFSARVSGDCLLPGNKHPDWLTFSGIDSSVTFDVPQVNGRKLKTVVLCIVYSSSPNNVPSEGHIIKSLFIINHTKTTPYIYDGDTLASLRDEEWQKVISNLEAGDKVQIVVVVGLGITVKKTAIYLIYGEPVDQTTEQQAYGIVSGDDMVADANLTVQVGDEKKNLNSLKKRKFQRV 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121910g00001 1066 SMART till_3 5 146 IPR000157 GO:0007165
Stsc121910g00001 1066 Pfam TIR domain 6 170 IPR000157 GO:0007165
Stsc121910g00001 1066 SUPERFAMILY L domain-like 541 815 - -
Stsc121910g00001 1066 Gene3D - 1 179 IPR035897 -
Stsc121910g00001 1066 SUPERFAMILY "Winged helix" DNA-binding domain 413 519 IPR036390 -
Stsc121910g00001 1066 SMART AAA_5 204 332 IPR003593 GO:0016887
Stsc121910g00001 1066 FunFam Disease resistance protein (TIR-NBS-LRR class) 2 174 - -
Stsc121910g00001 1066 Gene3D Ribonuclease Inhibitor 521 892 IPR032675 -
Stsc121910g00001 1066 Gene3D - 342 426 IPR042197 -
Stsc121910g00001 1066 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 148 IPR035897 -
Stsc121910g00001 1066 PRINTS Disease resistance protein signature 284 298 - -
Stsc121910g00001 1066 PRINTS Disease resistance protein signature 377 391 - -
Stsc121910g00001 1066 PRINTS Disease resistance protein signature 207 222 - -
Stsc121910g00001 1066 PRINTS Disease resistance protein signature 616 632 - -
Stsc121910g00001 1066 Gene3D - 180 337 IPR027417 -
Stsc121910g00001 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 436 IPR027417 -
Stsc121910g00001 1066 Coils Coil 703 723 - -
Stsc121910g00001 1066 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 786 IPR044974 GO:0006952
Stsc121910g00001 1066 ProSiteProfiles TIR domain profile. 4 172 IPR000157 GO:0007165
Stsc121910g00001 1066 Pfam NB-ARC domain 187 412 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121910g00001 Stsc-Chr121910 592 16685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121910g00001 4 736 WRKY Transcription Factor Family AT4G12020 29.084 1.59e-75 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121910g00001 - - ahf:112727920 1777.68