Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121904g00001 ATGGACTACTACTGGACCAGAGGTCAAACCCTCGGCAGGGGCTCCACCGCCACCGTCTATGCTGCTCAATTCCATCACTCCGCTGAACTCTTTGCCGTGAAATCAGCGGAGCTTCACCGCTCCGAGGAGCTCCGGAAGGAACAGAGTCTTCTTTGTTCTCTGAATTGTCCTCAGATTGTCAAGTACCAAGGGTACGATGTTACGTACGAGGATGGTGAGTACTTTTACAACCTGTTCTTGGAGTACGCGCCAAGGGGGACCTTGGTTGACGTAATTGCCCACCACAACCACGGCGGTGCCACCATGGAAGATTCATTGGCCAGTTTCTACACGCGCCAGATTCTGTTGGCCCTCAACTACCTTCATTCCAATGGGATAGTGCATTGCGATGTCAAGGGGCAGAACGTGTTAATCACCCAAAATGGCGCCAAAATCGCCGACTTTGGTTGTGCCCGGAAAGTTAGCTCCGGTGGTGGTGGAGGAGGAGGGGTTATCGCTGGGACGCCTGCGTTCATGGCGCCGGAAGTGGCGCGTGGGGATGAACAGGGGTTCCCTGCTGACGTGTGGGCCCTGGGGTGCACGGTTCTGGAGATGTTTACCGGAAAACCGCTGTGGAGGGACGTTTCCGGGGACCCTGTGTCTGTGCTTTATCGGGTTGGATTCTGTGGCGAGGCGCCAGAGATTCCGGGATCTGTGTCGGAGGAAGTTAAGGACTTTTTGGGGAAGTGCTTCAGGAGTGAGGCGAGTAAGAGGTGGACGGTGAAAGAGCTTCTGGGTCACGCTTTCGTTGCGGAATCCCGTTTTGTGGGAATGAAATGTGTTGATCATGATTTGGACACACCCACAAGTGTCTTGGAACCACAAGCCCTTTGGAACTGGGACACCAATCACGACTCGCCACGTGGATCATTCTCTTCTTCAATGGATTATTCTCCAAGTGCTAGGGACAGAGTTCTTGGTTTGTGTTCTCATGATGCTCCTAATTGGGAACTTTATGATGCTGATCATGATGATACATGGATCACTGTGAGAACCAATGGGGACTACTTTCCCGTTCAGGATGCTCAAGATTTTTGTTCAGATAATGATCGGATACTTAGAGAAGACACTGATGATGAGAATGTTTTGGTGAATTTAACTCATGAATTGAGCAGATGGGATAATGTAGTAGTTGGTGATTCTTATTACCTTTGCAGAATCAATGATTCATTTGAGCATCAGCATGGTTAA 1230 0.5033 MDYYWTRGQTLGRGSTATVYAAQFHHSAELFAVKSAELHRSEELRKEQSLLCSLNCPQIVKYQGYDVTYEDGEYFYNLFLEYAPRGTLVDVIAHHNHGGATMEDSLASFYTRQILLALNYLHSNGIVHCDVKGQNVLITQNGAKIADFGCARKVSSGGGGGGGVIAGTPAFMAPEVARGDEQGFPADVWALGCTVLEMFTGKPLWRDVSGDPVSVLYRVGFCGEAPEIPGSVSEEVKDFLGKCFRSEASKRWTVKELLGHAFVAESRFVGMKCVDHDLDTPTSVLEPQALWNWDTNHDSPRGSFSSSMDYSPSARDRVLGLCSHDAPNWELYDADHDDTWITVRTNGDYFPVQDAQDFCSDNDRILREDTDDENVLVNLTHELSRWDNVVVGDSYYLCRINDSFEHQHG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121904g00001 409 SUPERFAMILY Protein kinase-like (PK-like) 5 313 IPR011009 -
Stsc121904g00001 409 Gene3D Transferase(Phosphotransferase) domain 1 2 298 - -
Stsc121904g00001 409 CDD STKc_MAPKKK 5 263 - -
Stsc121904g00001 409 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Stsc121904g00001 409 SMART serkin_6 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121904g00001 409 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 348 - -
Stsc121904g00001 409 ProSiteProfiles Protein kinase domain profile. 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121904g00001 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Stsc121904g00001 409 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121904g00001 Stsc-Chr121904 9112 10799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121904g00001 5 292 MAP Kinase Kinase Kinase AT2G32510 50.853 9.31e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc121904g00001 Pkinase 2.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121904g00001 K20716 - gmx:100802174 372.474