Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc121899g00005 | ATGGCAGGTTCATCATCATCATCAGATCTGAATTCAACACCATTGTCATATTTCAAGTATGATGTTTTTCTTAGCTTCAGAGGCCACACTAGGTTAAAATTCACAGACACACTCTATCATGCTTTGATCAACAAAAGAATTAAAACCTTCAGAGATAGTGAGGAGCTTAGAATAGGTGAGGAGCTTGAAGGTTCTCTTCTTGAAGCCATTCAAAGATCAAGGATGTCACTTCTTATTCTCTGTGATGAGTATCCAACTAGCCACTGGTGCCTTGATGAGCTTGTCAAGATCATGGAGTGTTCCGACAACGGAAGAAAGCGGCCGGTGTTACCAATCTATTTCCTTGTGGAAAAATCAGATGTGCAGTTTCAGAAAAATAAGTATGAAACAGCCATGGCTGCTCATGAAGAAAAAGGAAGATACAATCACAAGTTGGAAGCATGGAAGTCAGCTTTGTCTGAAGTAGGCAAGATTTATGGTCAACGCTGTGATCATAAAACACCGTTGGGTAAGGCTATTGATAACATTGTTGAAGAGGTCACAAAAAGACTTCCTCCCTTGCCTTTGCATATTGACCATCCACTTGGACTTGATTCTGAACTTGAAGAGGCGAAATCACTTCTAGAGATTGGTTCTCGTGCTACCTGTTTCATGCTGGGAATTCATGGAGACGGCGATGATATAAGCAAATTTGTTGCGGAGCTGTATAACAAGATTAGGCCTCACTTTGAAACTGCAAGTTTTCTTTCTAATATCAGAAAGAAAACAACTGAAAGTGGTGGTGGCTTAGAAGATCTACAAGAGAGGCTTCTTTCTGAGATGGGAGAGGAGGTAAAGTCTAAGTTCGGAAGCACATTCAAAGGATCCTCTGAAATAAAACAAAGATTAGGCCAAAAAAGGGTTCTTCTGGTTTTGGACGATGTTGATAGTATACAACAACTGAGTTCACTAGCAGGAGGACTTGATTGGTTTGGTCCTGGTAGCAGGATCATTATAACAACAAGATATGAAGATGTGCTTGATGATCATCTGTCATATAATGGTGTTGAGGTTAAGAAATACTGCATCACTGAAGGAAGTAGTTCTACTGTGAAGGAAGAAAATGTAGTGGGATTGAAGAAAGATTTTGAAATTGTGATTAATCAACTCAAAGAAGAAGATTCTTCTGAGAATGTTGTTTCCATTGTTGGGATGGGTGGGTTAGGAAAGACTACCCTTGCTCGAAAGATCTATAACAGCGATGAGGTCATGAAGCTATTCCCTTGCCGTGCTTGGGCAACTGTTTCCAAGGAGTACAGTGCAAAGGAAGTTCTCAAAAGCCTTCTCAAGTGTCTGAAGCCATCCACATCTGAAGATTCAAGCAGTGAAGAGGAGCTGAAGCAGAAGGTGAGTCGATGTCTGGAAGGGAAAAAGTACTTGGTAGTCCTTGATGATGTTTGGGATGCTAAAGCATGGCGCAGTATAAAGAATTGTTTACCAGAAAACAACAATGGTGGCATGATCCTACTAAGTACACGTAATGATCAGGTGGCTTATGCTTCAGAGTCAAAGGAACCTCATCACAGCCTTTCCTTTATGGATAAAGAGGAAAGTTGGGAACTGTTTCGCAATGAAGTTTTCTGCAGAAAAAACTGTCCTCCCGAGCTAGAACGAATTGGTAGATCAATTGTTGAAACTTGCAAGGGTTTACCATTGGCTATCAAAACCACAGCTGGTATTGTCGCAAAGAGGGAGAGATCAGAGGATGCATGGGAAGAAATTCTGAATTTACTCCCTTATTGGAGTGTTGCTGAGGAGGATAGCAGTGACGTGATGAAGATTTTGAAGTTTAGCTATGATGATTTGCCCAACAAAATGAAGCCTTGCTTTCTATATCTTGGGGTGTTTCCTGAAGATGACGAGATTCCAGCGAGAGACTTAATCCATCTATGGATGGCCGAAGGGTTCATAGAACCAATCCAAACCGGAAGATCAAAAGCACCTCCACAACCTGAAGATATTGGTGAGCAATACTTGAAGGAGCTTGTGGATCGTAACTTGGTACAAGTGATGAGGAGGAAGAGTGATGGCAAAGGCGTGAAAAGATGTCAGATCCACGATCTCTTACGGGAATTGTGCATATCAGAGAGCAACAAACCTGGCAACAATACTCATAAATTATCCTTTCTCAGCAACCTAGGATCCTATGCATGTTTAGTAACATGTAATCAACCATGCACTTATTCCTTGTTCGTTTATGGAGATCCAAATGAGTGGTCACATCATATTCCAGAGGCTTGCCAAGTTAATGTGCTATATGTTACACGTCACGTCCATATAGATAGAGATGAGTATTTGAAGTGGTTGAAAAACTCCAAGTTCTTGAGAGCGGAATTTTCTGAATCGC | 2386 | 0.4111 | MAGSSSSSDLNSTPLSYFKYDVFLSFRGHTRLKFTDTLYHALINKRIKTFRDSEELRIGEELEGSLLEAIQRSRMSLLILCDEYPTSHWCLDELVKIMECSDNGRKRPVLPIYFLVEKSDVQFQKNKYETAMAAHEEKGRYNHKLEAWKSALSEVGKIYGQRCDHKTPLGKAIDNIVEEVTKRLPPLPLHIDHPLGLDSELEEAKSLLEIGSRATCFMLGIHGDGDDISKFVAELYNKIRPHFETASFLSNIRKKTTESGGGLEDLQERLLSEMGEEVKSKFGSTFKGSSEIKQRLGQKRVLLVLDDVDSIQQLSSLAGGLDWFGPGSRIIITTRYEDVLDDHLSYNGVEVKKYCITEGSSSTVKEENVVGLKKDFEIVINQLKEEDSSENVVSIVGMGGLGKTTLARKIYNSDEVMKLFPCRAWATVSKEYSAKEVLKSLLKCLKPSTSEDSSSEEELKQKVSRCLEGKKYLVVLDDVWDAKAWRSIKNCLPENNNGGMILLSTRNDQVAYASESKEPHHSLSFMDKEESWELFRNEVFCRKNCPPELERIGRSIVETCKGLPLAIKTTAGIVAKRERSEDAWEEILNLLPYWSVAEEDSSDVMKILKFSYDDLPNKMKPCFLYLGVFPEDDEIPARDLIHLWMAEGFIEPIQTGRSKAPPQPEDIGEQYLKELVDRNLVQVMRRKSDGKGVKRCQIHDLLRELCISESNKPGNNTHKLSFLSNLGSYACLVTCNQPCTYSLFVYGDPNEWSHHIPEACQVNVLYVTRHVHIDRDEYLKWLKNSKFLRAEFSES | 795 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc121899g00005 | 795 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 184 | 348 | IPR027417 | - | |
| Stsc121899g00005 | 795 | Gene3D | - | 349 | 520 | IPR027417 | - | |
| Stsc121899g00005 | 795 | Gene3D | - | 16 | 181 | IPR035897 | - | |
| Stsc121899g00005 | 795 | Pfam | TIR domain | 19 | 183 | IPR000157 | GO:0007165 | |
| Stsc121899g00005 | 795 | Pfam | NB-ARC domain | 374 | 614 | IPR002182 | GO:0043531 | |
| Stsc121899g00005 | 795 | Pfam | NB-ARC domain | 264 | 345 | IPR002182 | GO:0043531 | |
| Stsc121899g00005 | 795 | Gene3D | - | 526 | 616 | IPR042197 | - | |
| Stsc121899g00005 | 795 | ProSiteProfiles | TIR domain profile. | 18 | 184 | IPR000157 | GO:0007165 | |
| Stsc121899g00005 | 795 | PRINTS | Disease resistance protein signature | 392 | 407 | - | - | |
| Stsc121899g00005 | 795 | PRINTS | Disease resistance protein signature | 466 | 480 | - | - | |
| Stsc121899g00005 | 795 | PRINTS | Disease resistance protein signature | 560 | 574 | - | - | |
| Stsc121899g00005 | 795 | Gene3D | - | 182 | 346 | IPR027417 | - | |
| Stsc121899g00005 | 795 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 12 | 160 | IPR035897 | - | |
| Stsc121899g00005 | 795 | Gene3D | - | 617 | 707 | IPR036388 | - | |
| Stsc121899g00005 | 795 | SMART | till_3 | 19 | 158 | IPR000157 | GO:0007165 | |
| Stsc121899g00005 | 795 | FunFam | Probable disease resistance protein At1g61300 | 351 | 519 | - | - | |
| Stsc121899g00005 | 795 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 363 | 626 | IPR027417 | - | |
| Stsc121899g00005 | 795 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 20 | 340 | IPR044974 | GO:0006952 | |
| Stsc121899g00005 | 795 | FunFam | Probable disease resistance protein At1g63360 | 612 | 708 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc121899g00005 | Stsc-Chr121899 | 18015 | 20688 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc121899g00005 | 67 | 340 | WRKY Transcription Factor Family | AT4G12020 | 28.364 | 5.11e-18 | 87.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc121899g00005 | - | - | adu:107486433 | 1303.5 |