Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121898g00001 ATGTCTAGTTCCAAGAGTGTTAGTAGCAGTGGTAGCAGTGAAGATGACAATAATCAAATTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAATCTTCTCACACAATCCATTGCTAACCAAGGCGAAGGACGATGGAATTTACTTGCTAAACGTTCAGGATTAAAGAGAACAGGGAAAAGTTGCAGATTGAGATGGCTGAATTATCTAAAGCCGGATGTAAAGAGAGGAAATTTAACACCACAGGAGCAGCTTTTGATTCTTCAACTTCACTCAAAGTGGGGGAACAGGTGGTCAAAGATTGCACAGCATTTACCAGGAAGGACAGACAATGAAATCAAGAACTACTGGAGAACCAAGATTCAGAAACAAGCAAGGCATTTGAAAATCAACACAGATAGCAGACAGTTTCAAGAACTAGTCAGCCGTTTCTGGATTCCAAGATTGCTTCAGAAAGCAAGTGAATCATCCTCCTCCTCTTCTTCTTCTTCTTTTTCTTCTTCAGCCATGTCAATCCAAAACCAAGCAACTATACCTGTTTCTCAGTATTCACCTTCACCACCAACAACTTCTTGTGTGCATCAAGGACATGAGCAACTCAGCAATGATTCATGCGTATCCTTCTCTGAACCAAAAGTGCCTCAGTTTTTGGGATACAACTCCAACCAATTTGATGAACTTGGCACCTTCGCATATGATGAAGGGTACCATGTAAATAGCAATGCTTATGAGATTGAAAACTTCAACATGGAATACCCTGTTGATGATTGCCAAATGGCAAGACACAATTGGGTAAACAATGATTTTGCATGTGACTTGTGGAACATGGATGAATTCTGCCAATTTAGTAACTTACAAAAATAA 861 0.4007 MSSSKSVSSSGSSEDDNNQIRRGPWTLEEDNLLTQSIANQGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILQLHSKWGNRWSKIAQHLPGRTDNEIKNYWRTKIQKQARHLKINTDSRQFQELVSRFWIPRLLQKASESSSSSSSSSFSSSAMSIQNQATIPVSQYSPSPPTTSCVHQGHEQLSNDSCVSFSEPKVPQFLGYNSNQFDELGTFAYDEGYHVNSNAYEIENFNMEYPVDDCQMARHNWVNNDFACDLWNMDEFCQFSNLQK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121898g00001 286 Gene3D - 78 121 - -
Stsc121898g00001 286 MobiDBLite consensus disorder prediction 1 20 - -
Stsc121898g00001 286 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Stsc121898g00001 286 CDD SANT 24 69 IPR001005 -
Stsc121898g00001 286 FunFam MYB transcription factor 78 120 - -
Stsc121898g00001 286 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Stsc121898g00001 286 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 192 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc121898g00001 286 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Stsc121898g00001 286 MobiDBLite consensus disorder prediction 1 24 - -
Stsc121898g00001 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Stsc121898g00001 286 Gene3D - 22 74 - -
Stsc121898g00001 286 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Stsc121898g00001 286 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Stsc121898g00001 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Stsc121898g00001 286 CDD SANT 79 118 IPR001005 -
Stsc121898g00001 286 SMART sant 21 71 IPR001005 -
Stsc121898g00001 286 SMART sant 74 122 IPR001005 -
Stsc121898g00001 286 FunFam Myb transcription factor 22 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121898g00001 Stsc-Chr121898 9384 10576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121898g00001 17 281 MYB Transcription Factor Family AT1G68320 47.751 2.64e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121898g00001 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121898g00001 K09422 - gmx:778045 370.163