Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121897g00002 ATGGCGAACCCTAGGATTTATTTTCACATGAACATCCCCGGTCAACTTGTCAGACCAGTCATCTTCAAGCTCTTCAAGGACACCATTCCAAACAACGCTGAGAATTTCTGCGCTCTCTGCACCCGTGAGAAAGGTACGGGTCACAGTGGTAAGCCTCTCCACTACAAGGGATCATTCTTCCACCGTGTTATCCCTAATTTCATGTGCCACAGAGGTGACTTCACTGTTGGAAATGGCACCGGTGTTCACGATGAGAACTTCATCAAGAAGCACAATGGTCCAGGAATCCGTTCCATGGCGAACGCCGGACCTGGAACAAACAGATCTCAGTTCTTCATTTGCACCACGAAGACCGAGTGGCTCGACGAAAGCACATTGTGTTTGGTCAGGTTGTTGAGGGAATGA 405 0.4889 MANPRIYFHMNIPGQLVRPVIFKLFKDTIPNNAENFCALCTREKGTGHSGKPLHYKGSFFHRVIPNFMCHRGDFTVGNGTGVHDENFIKKHNGPGIRSMANAGPGTNRSQFFICTTKTEWLDESTLCLVRLLRE 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121897g00002 134 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Stsc121897g00002 134 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Stsc121897g00002 134 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 110 IPR002130 GO:0000413|GO:0003755
Stsc121897g00002 134 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 122 IPR002130 GO:0000413|GO:0003755
Stsc121897g00002 134 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 134 IPR002130 GO:0000413|GO:0003755
Stsc121897g00002 134 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 126 - -
Stsc121897g00002 134 SUPERFAMILY Cyclophilin-like 2 123 IPR029000 -
Stsc121897g00002 134 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 19 125 IPR002130 GO:0000413|GO:0003755
Stsc121897g00002 134 Gene3D - 1 132 IPR029000 -
Stsc121897g00002 134 PIRSF Peptidylpro_ismrse 1 132 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121897g00002 Stsc-Chr121897 8626 9053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121897g00002 23 113 U-box Gene Family AT5G67530 40.196 2.29e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121897g00002 K01802 - gmx:100787030 187.193