Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121886g00002 ATGGAGGGTCCACAAAAGGGTGATGAACAAAACTTGTCACAGTCTAAAAGACTCAGTGATTCAATTTCTATTCCTGTGAATTCTGTATATTCTCATGGGAATGACACCACAGCTATGGAACATTGTGAACTAGATAACCACATTCATCAAATTCAAGATTCTGTAAATTGCAGAAAGAAGAATTTTATGTTGGATAACAAAAATGACAAATTAAAGAATAGTCCCCAGTGCTTCAATAATGCTAAGGGCTTAGTTACAAGATTATCCTCATTCATATATTCACACATTCCTGGAGTTATAAACCCTCATGATAAAGCCATACAACGGTGGAACAGATTCTTTATCATTGCTTGTTTGGTGGCAATTTTTGTAGACCCTTTGTTTTTCTTCTTGCTGTCAACGGATCAGAGACTTAGCTGCATAGACATTGAGTTGGCTAGTAGTTCCACCACACAAGCAATTGTAACTTTAAGAAGCATGACTGATATTGTATACTTCCTACATATGCTTCTCCAGTTTAGGTTGGCTTTTGTAGCTCCTGAGTCTAGAGTGGTAGGTGCTGGAGAAGTGGTTGATGATCCAAAGAAAATTGCAACGAATTACCTTACTGGATATTTTGTTATTGATATGTATAATATTATTATATTACTTGTGCTACCAAAATCTTTTGATTCTTCTAGTACTAGATCAGGAGCTAATTTTGCAAAGAATATGTTAAGAACTTCTATGGTTGTACAATACCTACCTAGACTATGCCGGTTTGTTTCTCTACTGGCGGGGCGGACTCCTGTCGGTTTAATCTTCGAGTCGGCATGGGGAAATTTTGTTATCAATCTTTCTATGTTCATGCTGTCTGCTCATGTTGTGGGTTCATGCTGGTATCTCTTTGGTTTGCAGAGAGTTAACCAATGCCTTAGAGATGCATGCTACACCATCAACCTTAAAGAATGCATGAGATTCGTAGATTGCGGGTACAAAAGCAGTTTCAACTCTGATCCGAATTGGCGAGTCTGGGCGGAGAATTCCACGGCTAACAGTTGCTTTACCACAAGTGGTTTCCCCTATGGAATCTATGCTCAAGCTGTTCAACTTACCACACAAAGTTTTATAAACAAATATATTTATTCTTTGTTCTGGGGATTCCAGCAAATAAGCACTCTAGGTGGAAATCAAACTCCAAGTTACTTCATTTGGGAAGTTCTTTTCACCATGGCTATCATTGGTCTAGGTCTGCTTCTCTTCGCTCTTCTCATTGGAAATATGCAGCAATTTCTTCAGGCACTTGGACAGAGGAGATTGGAAATGTCATTAAGGCAACGAGATTATGAACGGTGGATGGCTCATCGATGCTTGCCTGAAGAATTAAGAAGGCAAGTAAGGAGTGCTGAACGGTATAACTGGTTTGCCACTAGAGGAGTAAATGAGGAACTTCTTTTGGAGAATCTGCCTGAAGAACTTCAAAGAGATATAAGGCGTCATCTCTTCAAATTTGTTAAGAAAGTTCGAATTTTTTCCATGATGGATGATCAAGTCATAGATGCTATCTGTGAGAGGCTAAAGCTGAAGATATTCATTGAAGAAAGCACAATTCTATACCCTGGTGGTCCTATTGAAAAGATGATCTTCATCATACGCGGAAATTTAGAGAGCACTGAGGATAAAACTACGGTTTCATTATCCGAAGGAGATGTTTGTGGCGAGGAACTTCTCACATGGTGCCTAGAAAAGTATTCAGTGAACAAAAATGCGAGAAAAATGAGGATCGCCGGTCGGAGACTGCTGAGCAACAGAACAGTTAGATGCATAACTAATGCAGAAGCATTTTCTCTGCAACTTGCAGATCTTGAAGAGGTTACTATTCTTTTTGCAAGATTTTTGCGGAATCCACATGTTCAAGGAGCTATCAGGTATGAATCACCATATTGGAGGGCCTTTGCAGCAAAATGCATTCAAGTAGCATGGAGATATTGGAGGAGGCGTCAACAACGGAAGCTTTCATCAATACTCAAACCCCAAAAGAGTGATTTGCATTTGCTTGAGTTCCTTAGATGA 2052 0.3938 MEGPQKGDEQNLSQSKRLSDSISIPVNSVYSHGNDTTAMEHCELDNHIHQIQDSVNCRKKNFMLDNKNDKLKNSPQCFNNAKGLVTRLSSFIYSHIPGVINPHDKAIQRWNRFFIIACLVAIFVDPLFFFLLSTDQRLSCIDIELASSSTTQAIVTLRSMTDIVYFLHMLLQFRLAFVAPESRVVGAGEVVDDPKKIATNYLTGYFVIDMYNIIILLVLPKSFDSSSTRSGANFAKNMLRTSMVVQYLPRLCRFVSLLAGRTPVGLIFESAWGNFVINLSMFMLSAHVVGSCWYLFGLQRVNQCLRDACYTINLKECMRFVDCGYKSSFNSDPNWRVWAENSTANSCFTTSGFPYGIYAQAVQLTTQSFINKYIYSLFWGFQQISTLGGNQTPSYFIWEVLFTMAIIGLGLLLFALLIGNMQQFLQALGQRRLEMSLRQRDYERWMAHRCLPEELRRQVRSAERYNWFATRGVNEELLLENLPEELQRDIRRHLFKFVKKVRIFSMMDDQVIDAICERLKLKIFIEESTILYPGGPIEKMIFIIRGNLESTEDKTTVSLSEGDVCGEELLTWCLEKYSVNKNARKMRIAGRRLLSNRTVRCITNAEAFSLQLADLEEVTILFARFLRNPHVQGAIRYESPYWRAFAAKCIQVAWRYWRRRQQRKLSSILKPQKSDLHLLEFLR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121886g00002 683 Gene3D Jelly Rolls 501 624 IPR014710 -
Stsc121886g00002 683 Gene3D - 113 424 - -
Stsc121886g00002 683 Pfam Ion transport protein 110 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc121886g00002 683 Gene3D Helix hairpin bin 425 495 - -
Stsc121886g00002 683 SUPERFAMILY Voltage-gated potassium channels 102 431 - -
Stsc121886g00002 683 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 77 666 - -
Stsc121886g00002 683 CDD CAP_ED 503 618 IPR000595 -
Stsc121886g00002 683 ProSiteProfiles cAMP/cGMP binding motif profile. 503 570 IPR000595 -
Stsc121886g00002 683 SUPERFAMILY cAMP-binding domain-like 431 620 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121886g00002 Stsc-Chr121886 5030 11606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121886g00002 78 580 Ion Channels AT3G17700 58.708 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121886g00002 K05391 - jre:109012085 801.971