Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121878g00002 ATGCCGGTTTGGGCGGCTATTTGGGACTTGCAATTGCCATCATGTATGAGAGGAGTTTGGGTGAAGAATCTCCTTGGGCAGGGTACCTTCAGGTCTTGCCCGAACAAGAGTGTGTGCCATTGGTTTGGACCCTCGATGAAGTCGATGAGCTTTTGCGTGGAACCGAGCTTCCTCAGGCAGACGGTAAAAGAAGACAAAGTGCTTATCTGTGAAGACTGGAAAGAAAATATCTTTCCTCTATTGGATTCAGCACCTTCAAGGCTTAACCCAGCATTTTTTGGTATAGAACAATACTTCGCTGCAAAAAGTCTTATTTCTTCACGGGGTTTTGAGATAGATGATTACCATGGTTTTGGTATGGTTCCCCTGGCAGATCTATTCAATCATAAAACAGGGGCTGAGGATGTGCATTTCACTGCCTCATCTAATTATGTATCTGATGATGATGCCGATGATAATAATAGTAACAATGATGAGAGCATTGCTGATGAAGAAGCATTGTCTGAGAAACTTTCCACAGGCACGACTGATCTGGATGCACCTCAGGTTGAGAACGGCAATGCTGGTGACACAGAGTGTTTGTCAGATACGGGAGATGGCGATCCTTCAATGCTGGAAATGATTGTGGTAAAAGATGTCAGCAGTGGAGCAGAGGTATTTAATACTTATGGGTTGATGGGTAATGCTGCATTGCTTCATAGATATGGCTTTACTGAGCAAGATAATCCTTATGACATTGTTAACATTGATTTGGAAACGGTACTTCAATGGTGCTCTTCTTTGTTTTCCGATCGGCATAGTAGGTCAAGGGTCTCCCTATGGAGAAGGTTAGGCTACTCTGCATGCGGTGACGAAAACTCAGAATATTTTGAGATCTCATTTGAAGGAGAACCCCAGACTGGACTCATAGTTTTGTTGTATGTCATGCTATTGCCAGATAATGCATACCATAAGTTGGACCCCTCGCTATCGGTTGCCGGATCTGGTCATGAATCAAGAGATGCCAATCTTTTGGATGATAACATATTTGCAATCAAATCATGTAATGTGAGCAAGAGATCTCTGCTGACCAAAAAAGTATGTGATGGTTTGTTAGCACTTGTTAACATGAGGGACAGTCTCTATGGTTCGGAATCGATAGAAGACGATATTGTGCAACTGGGAAATTGTAATTCGGTTAGAGAGAGGAAGCTGTATCATTCTTTGGTGCTGCGGATATGTGAAAGGAGGATCCTTCAGAGGCTCAGAGATTTTGCTTCTGAGCCATTTGAAACCAATAATCATGGTTCTTCAAGGAAGAAGTTGAAGAAGTCAACAAAGAGAAAAAGATGA 1332 0.4257 MPVWAAIWDLQLPSCMRGVWVKNLLGQGTFRSCPNKSVCHWFGPSMKSMSFCVEPSFLRQTVKEDKVLICEDWKENIFPLLDSAPSRLNPAFFGIEQYFAAKSLISSRGFEIDDYHGFGMVPLADLFNHKTGAEDVHFTASSNYVSDDDADDNNSNNDESIADEEALSEKLSTGTTDLDAPQVENGNAGDTECLSDTGDGDPSMLEMIVVKDVSSGAEVFNTYGLMGNAALLHRYGFTEQDNPYDIVNIDLETVLQWCSSLFSDRHSRSRVSLWRRLGYSACGDENSEYFEISFEGEPQTGLIVLLYVMLLPDNAYHKLDPSLSVAGSGHESRDANLLDDNIFAIKSCNVSKRSLLTKKVCDGLLALVNMRDSLYGSESIEDDIVQLGNCNSVRERKLYHSLVLRICERRILQRLRDFASEPFETNNHGSSRKKLKKSTKRKR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121878g00002 443 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 234 431 IPR036464 -
Stsc121878g00002 443 MobiDBLite consensus disorder prediction 423 443 - -
Stsc121878g00002 443 MobiDBLite consensus disorder prediction 169 192 - -
Stsc121878g00002 443 SUPERFAMILY SET domain 202 242 IPR046341 -
Stsc121878g00002 443 PIRSF RMS1_SET 56 422 IPR011383 GO:0016279|GO:0018026
Stsc121878g00002 443 SUPERFAMILY SET domain 52 139 IPR046341 -
Stsc121878g00002 443 CDD SET_LSMT 54 238 - -
Stsc121878g00002 443 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 58 413 - -
Stsc121878g00002 443 Gene3D set domain protein methyltransferase, domain 1 32 237 - -
Stsc121878g00002 443 MobiDBLite consensus disorder prediction 165 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121878g00002 Stsc-Chr121878 6584 9453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121878g00002 45 435 NAC Transcription Factor Family AT3G56570 48.926 2.00e-118 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121878g00002 - K05302 gmx:100794971 490.345