Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121878g00001 ATGGCCACCAGGCGTTTGAGGGCATTCAAGCGATGGATGAGTTCAAATGGATTCGAATGGAGTGATGCCTTGGAGTTTGTGGACACCCGGGAAGAGGGGATATCTGTTAGAGCACTTTGCCAACTTAAGGAAGGTGATGTTGTGGCCAACATGCCGAAGAAAGCATGCCTCACCGTAAGGACTAGCATGGCTCGTGATATAATCGAAGATGCCGGTTTGGGCGGCTATTTGGGACTTGCAATTGCCATCATGTATGAGAGGAGTTTGGGTGAAGAATCTCCTTGGGCAGGGTACCTTCAGGTCTTGCCCGAACAAGAGTGTGTGCCATTGGTTTGGACCCTCGATGAAGTCGATGAGCTTTTGCGTGGAACCGAGCTTCCTCAGACGGTAAAAGAAGACAAAGTGCTTATCTGTGAAGACTGGAAAGAAAATATCTTTCCTCTATTGGATTCAGCACCTTCAAGGCTTAACCCAGCATTTTTTGGTATAGAACAATACTTCGCTGCAAAAAGTCTTATTTCTTCACGGGGTTTTGAGATAGATGATTACCATGGTTTTGGTATGGTTCCCCTGGCAGATCTATTCAATCATAAAACAGGGGCTGAGGATGTGCATTTCACTGCCTCATCTAATTATGTATCTGATGATGATGCCGATGATAATAATAGTAACAATGATGAGAGCATTGCTGATGAAGAAGCATTGTCTGAGAAACTTTCCACAGGCACGACTGATCTGGATGCACCTCAGGTTGAGAACGGCAATGCTGGTGACACAGAGTGTTTGTCAGATACGGGAGATGGCGATCCTTCAATGCTGGAAATGATTGTGGTAAAAGATGTCAGCAGTGGAGCAGAGGTATTTAATACTTATGGGTTGATGGGTAATGCTGCATTGCTTCATAGATATGGCTTTACTGAGCAAGATAATCCTTATGACATTGTTAACATTGATTTGGAAACGGTACTTCAATGGTGCTCTTCTTTGTTTTCCGATCGGCATAGTAGGTCAAGGGTCTCCCTATGGAGAAGGTTAGGCTACTCTGCATGCGGTGACGAAAACTCAGAATATTTTGAGATCTCATTTGAAGGAGAACCCCAGACTGGACTCATAGTTTTGTTGTATGTCATGCTATTGCCAGATAATGCATACCATAAGTTGGACCCCTCGCTATCGGTTGCCGGATCTGGTCATGAATCAAGAGATGCCAATCTTTTGGATGATAACATATTTGCAATCAAATCATGTAATGTGAGCAAGAGATCTCTGCTGACCAAAAAAGTATGTGATGGTTTGTTAGCACTTGTTAACATGAGGGACAGTCTCTATGGTTCGGAATCGATAGAAGACGATATTGTGCAACTGGGAAATTGTAATTCGGTTAGAGAGAGGAAGCTGTATCATTCTTTGGTGCTGCGGATATGTGAAAGGAGGATCCTTCAGAGGCTCAGAGATTTTGCTTCTGAGCCATTTGAAACCAATAATCATGGTTCTTCAAGGAAGAAGTTGAAGAAGTCAACAAAGAGAAAAAGATGA 1536 0.4342 MATRRLRAFKRWMSSNGFEWSDALEFVDTREEGISVRALCQLKEGDVVANMPKKACLTVRTSMARDIIEDAGLGGYLGLAIAIMYERSLGEESPWAGYLQVLPEQECVPLVWTLDEVDELLRGTELPQTVKEDKVLICEDWKENIFPLLDSAPSRLNPAFFGIEQYFAAKSLISSRGFEIDDYHGFGMVPLADLFNHKTGAEDVHFTASSNYVSDDDADDNNSNNDESIADEEALSEKLSTGTTDLDAPQVENGNAGDTECLSDTGDGDPSMLEMIVVKDVSSGAEVFNTYGLMGNAALLHRYGFTEQDNPYDIVNIDLETVLQWCSSLFSDRHSRSRVSLWRRLGYSACGDENSEYFEISFEGEPQTGLIVLLYVMLLPDNAYHKLDPSLSVAGSGHESRDANLLDDNIFAIKSCNVSKRSLLTKKVCDGLLALVNMRDSLYGSESIEDDIVQLGNCNSVRERKLYHSLVLRICERRILQRLRDFASEPFETNNHGSSRKKLKKSTKRKR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121878g00001 511 MobiDBLite consensus disorder prediction 237 260 - -
Stsc121878g00001 511 ProSiteProfiles SET domain profile. 22 292 IPR001214 GO:0005515
Stsc121878g00001 511 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 302 499 IPR036464 -
Stsc121878g00001 511 PIRSF RMS1_SET 1 490 IPR011383 GO:0016279|GO:0018026
Stsc121878g00001 511 SUPERFAMILY SET domain 4 207 IPR046341 -
Stsc121878g00001 511 MobiDBLite consensus disorder prediction 233 265 - -
Stsc121878g00001 511 CDD SET_LSMT 23 306 - -
Stsc121878g00001 511 Gene3D set domain protein methyltransferase, domain 1 241 306 - -
Stsc121878g00001 511 Gene3D set domain protein methyltransferase, domain 1 4 238 - -
Stsc121878g00001 511 MobiDBLite consensus disorder prediction 491 511 - -
Stsc121878g00001 511 Pfam SET domain 33 292 IPR001214 GO:0005515
Stsc121878g00001 511 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 481 - -
Stsc121878g00001 511 SUPERFAMILY SET domain 270 310 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121878g00001 Stsc-Chr121878 6513 9830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121878g00001 1 503 NAC Transcription Factor Family AT3G56570 54.323 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc121878g00001 SET 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121878g00001 - K05302 gmx:100794971 678.707