Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121875g00002 ATGTTTCTTTCAGAGGAAAAGATTAAAGATTGTATCATTTCACCATCTCAAGTAACAGACTCTAATGATGATGACACATGGAATGTTCAATTATTCAGATCCATTGATAACAATGCTACCCTTGGGTTTCCAAAATCTGCTGATGAAGATGCTTTTAAATTTGGGCTTATGAATGAAGAGAATAAAATGAAAGATAGAAGCATTCAAGATGCATATATTCAAGCAATTAGGCGGGCGAAAAATTTTATTTATATTGAGAATCAATATTTCATAGGAAGCGATTTCGATTGGAGTGTTGATGAACAAAAAAAAGAGCACCCTGATGCTGTGAATCTAATACCAAAGGAGCTTTTGCTTAAGATTGTTAGCAAGATCAAAGCCAGGGAAAGGTTTGTTGTGTATGTTGTTATTCCAATGTGGCCAGAGGGTGTCCCTGAGAGTGGAAATGTTCAAAAAATATTATACTTGCAAAGGAGGACCATAAATATGATGTACGAGGACATTGTTCAAGCACTCGAGGAAGAAGGACTAGATGAAGATCCTCAGCAATATTTGGCATTCTTCTGTCTTGGCAATCGAGAGGTGAAGAATGATGAAGAATATGAGCCTCTACAAAAACCAAACCAATGTTCCAATTATATGAAATCACAGGAGGCCAGACGATTCATGATTTATGTGCATTCAAAAATGATGATAGTTGATGACGAATACATAGTGGTTGGATCTGCCAACATTAATCAGAGATCAATGGATGGAGGAAGAGACTCTGAAATCGCCATGGGAGCTTATCAACCGTACCATTTGGCTACCAACTATGATGGTGCGAGAGGCCAGATCCATGGCTTCCGCATGTCCTTATGGTATGAGCACCTCGGCAAACTTGACAACGCCTTCCTCAACCCTGAAAGCAAAGAATGTATTGAGAAAGTGAACCAACTTGCTATAGAGTATCTTTATGAATATGCTCGGGAGTCACCCATACAAGACCTTCTTGGACACCTGCTCCAATATCCTCTTCAAATTTCTGAAAAGGGAATCGTCATGAATACCAACAAATTCGAGTTCTTTCCGGACACAAATGCTCATATTGTAGGCAATAACGCCACTGATATAGTTACTCATATCATTCCTGATTTTGTGTATAAGAAGTATCAGACTATCAAGTATTTTGTGCCATCGGAGTGTGAGGAGGAGAGTGTGGAGGAGAGTGAGGAGGCATCCTCCGCCAGTACTCCCGCCTCACCCCATTGA 1251 0.3981 MFLSEEKIKDCIISPSQVTDSNDDDTWNVQLFRSIDNNATLGFPKSADEDAFKFGLMNEENKMKDRSIQDAYIQAIRRAKNFIYIENQYFIGSDFDWSVDEQKKEHPDAVNLIPKELLLKIVSKIKARERFVVYVVIPMWPEGVPESGNVQKILYLQRRTINMMYEDIVQALEEEGLDEDPQQYLAFFCLGNREVKNDEEYEPLQKPNQCSNYMKSQEARRFMIYVHSKMMIVDDEYIVVGSANINQRSMDGGRDSEIAMGAYQPYHLATNYDGARGQIHGFRMSLWYEHLGKLDNAFLNPESKECIEKVNQLAIEYLYEYARESPIQDLLGHLLQYPLQISEKGIVMNTNKFEFFPDTNAHIVGNNATDIVTHIIPDFVYKKYQTIKYFVPSECEEESVEESEEASSASTPASPH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121875g00002 416 Gene3D Endonuclease Chain A 18 270 - -
Stsc121875g00002 416 SMART pld_4 222 249 IPR001736 GO:0003824
Stsc121875g00002 416 Pfam Phospholipase D C terminal 295 366 IPR024632 -
Stsc121875g00002 416 SUPERFAMILY Phospholipase D/nuclease 66 307 - -
Stsc121875g00002 416 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 222 249 IPR001736 GO:0003824
Stsc121875g00002 416 PANTHER PHOSPHOLIPASE D 12 368 IPR015679 -
Stsc121875g00002 416 Pfam PLD-like domain 73 257 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121875g00002 Stsc-Chr121875 9101 11207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121875g00002 1 365 Phospholipase D Gene Family (Wang group) AT1G52570 63.661 3.82e-162 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121875g00002 K01115 - gmx:100786410 477.633