Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121875g00001 ATGGCGCCATTTCTGCTGCATGGACATATCGATGTAACCATTTATGAGGTTCAAAACGCCGAGGCCCTTTCATCGGGTCTTCCAAGTATAGTAAGAGTAATAAAGAGTGTTAACCATTATGTAAGCATTTATCTGGATGAAGTAAAGATTGAAAGCAGGCGAGTAAAAGATGTTATTGATAACCCTAAATCAGAAGAGTCTTTTTATATTCGTTGTGCCCATAAGACATCAAATATCATATTCATCTTGGAACGTGCCAACTACTTGTTTTCTGGACGATCTGTTCTTGGGCATGCATATGTAGCTGTTGATGAGAAAATCTTAAATGGTGATGAAGTAGACAAATGGGTTGACATAGTTGATGAGAGCAAAAAACCCATACCTGGGGTTCCAAAGATCCATGTCAAGCTACAATTCTTTGATGCTAAACGGCACCCAAACTGGTCTCAAGGAATCAAAGATCCTGATTTTCTTGGAGTTCCTCGCACTTTCTTCTCGCAACAAAAGGGATGCAAGGTTACACTTTATCAAGATGCTCATGTCGAAGATAATTTTTTCCCAAGAGTAGTGCTTGATGGAGGTGAGACTTACAAGCCTCAAAGATGCTGGGAGGATATATTTGATGCAATCAATGAAGCAAAACACTTTATATACACTGAAATTTCTCTTATAAGAGATCCAAAGAGGCCAAAGCATGGGGGAGACATAACACTTGGCCAGCTTCTCAAGAAAAAGGCAAAAGATGATGGAGTCAAGGTTGTGCTGCTTCTATGGCAGGATGGAATTCAAGTTCCAATTATTGGAAATTACATCAGCATCATGCATACTCATGATAAAGAAACCCAAAACTATTTTAAGGACACTAACGTGCATTGTGTTTTATGTCCTCGTGACAATACTTATTTCACTCATCATCAAAAGATTGTGGTGGTGGATGCTAAGTTACCAAATGGAGATGAGTCAAATAAAAGAAGAATAGTGAGTTTCATTGGAGGTATTGATCTCTGTGAGGGAGATATGACACTCCAATTCATTCACTCTTCAGAACCTTGA 1053 0.3884 MAPFLLHGHIDVTIYEVQNAEALSSGLPSIVRVIKSVNHYVSIYLDEVKIESRRVKDVIDNPKSEESFYIRCAHKTSNIIFILERANYLFSGRSVLGHAYVAVDEKILNGDEVDKWVDIVDESKKPIPGVPKIHVKLQFFDAKRHPNWSQGIKDPDFLGVPRTFFSQQKGCKVTLYQDAHVEDNFFPRVVLDGGETYKPQRCWEDIFDAINEAKHFIYTEISLIRDPKRPKHGGDITLGQLLKKKAKDDGVKVVLLLWQDGIQVPIIGNYISIMHTHDKETQNYFKDTNVHCVLCPRDNTYFTHHQKIVVVDAKLPNGDESNKRRIVSFIGGIDLCEGDMTLQFIHSSEP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121875g00001 350 Pfam Phospholipase D Active site motif 302 338 IPR001736 GO:0003824
Stsc121875g00001 350 Gene3D Endonuclease Chain A 191 344 - -
Stsc121875g00001 350 ProSiteProfiles C2 domain profile. 1 117 IPR000008 -
Stsc121875g00001 350 Pfam C2 domain 8 118 IPR000008 -
Stsc121875g00001 350 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 300 339 IPR001736 GO:0003824
Stsc121875g00001 350 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 141 IPR035892 -
Stsc121875g00001 350 Gene3D C2 domain 4 140 IPR035892 -
Stsc121875g00001 350 SUPERFAMILY Phospholipase D/nuclease 144 337 - -
Stsc121875g00001 350 PANTHER PHOSPHOLIPASE D 5 338 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121875g00001 Stsc-Chr121875 5414 8930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121875g00001 1 344 Phospholipase D Gene Family (Wang group) AT3G15730 47.340 1.11e-111 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121875g00001 K01115 - csv:101215246 350.903