Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121874g00001 ATGATGCCCCCTGAGCAAGAAAGCAATATTGCACCAAACATTATTAGTCCTGTGATTGCGAACCGAACCGGTGGTGGTGGTGGTGCTGAACCGGTGGAGGGATCCAATAATAACAAAGTCAAACCAAGTTTGGATGATAACAATAATAATAGTAACAATGATGCCTCCATTCATGAACACCAACACCACCATCAACATCAACCAACAAGAACAACAACAGCAGAAATAACAACACCACCACCAAGATTTTTTTCTATTCTTCAACAATCTCTGCGACCTATTACCCTCAAATTTGAAGACGTATCATACACCATAACATATCCAAGGCAAAACAAGAATAATGGCTGCTTCGTACCTCAAGAACCAAAGCACAGAAGGAAGATACTCACTGGAGTCACAGGCGTCGCTCGTCCCGGTGAGCTAACCGCAATGCTGGGGCCATCCGGGAGCGGCAAGACAACTCTCTTGACCGCCCTCGCTGGTCGCCTCGCCGGGAAGGTTACCGGCTCCATAACTTACAACGGCCGACACGACACCGCCGCCGTGAAGCGCAAGATAGGATTTGTCTCCCAAGACGACGTTCTTTACCCTCACCTCACCGTCCAAGAAACCCTAAATTACGCCGCCATGCTCAGGCTACCGAAGACTCTCACCAAGGAAGAGAAGCTCCAGCATGCAGACGCGATCGTCGCGGAACTCGGACTCACGCGGTGCCGGAACAGTCCCGTCGGCGGCGGAGTGTCGATTATCCGGGGAATCTCCGGCGGAGAGAGGAAAAGAGTGAGTATCGGGCTTGAGATGCTGATAAACCCTAGTTTGTTATTTCTCGACGAGCCTACGTCGGGGCTGGACTCCACGACGGCTCAGATGATCGTGTCGGTGGTACGAGGGCTCGCCCGCGGTGGTCGGACGGTGGTGACGACGATTCACCAGCCGTCGAGCCGGCTTTACAGGATGTTCGATAAGGTAGTGGTGCTGAGTGACGGGCACCCGATTTATTCGGGTCGATCGGGTCGGGTCATGGAGTATCTTGAATCCGTTGGGTTTGTTCCCGCTTTCAACTTCGTCAACCCTGCTGATTTCCTACTTGACCTTGCAAATGGCATAGTTGCTGATGTCAAACATGATGATAATGTTGAATATCATGAGGATCAAGCATCAGTCAAACAGTCCTTAATTTCATCCTACAAGAAGAACTTGTATCCTGCTCTTAAAGAAGAGATTCAAAGAAACAACATTGACTCAGTAACATCATCAGGAACACCAAGAAGTTCTGATAATCAATGGAACACAACCTGGTGGGAGCAATTGAAGGTCTTACTTAAGAGGGGTTTACAAGAGAGAAGACATGAATCCTTTTCAGGCCTTAGAATCTTCCAAGTTTTGTCTGTGTCCATTCTCTCAGGGCTTCTTTGGTGGCACTCTGATCACTCACACATACAAGATCAGGTTGGACTCCTTTTCTTCTTCTCAATCTTCTGGGGATTCTTCCCTCTCTTCAATGCTATATTTGCATTTCCTCTGGAGAGGCCAATGCTTATTAAAGAAAGATCATCAGGAATGTACCATCTGTCCTCTTACTATGTGGCAAGAATGCTCGGAGACTTGCCAATGGAGCTTGTCCTCCCTACAATCTTTGTAAGCATCAGCTACTGGATGGGAGGACTAAAGCCTTCAGTAGTGACATTTGTGCTAACNNNNNNNNNNGTCCCAAGGAATTGGCCTAGCACTCGGCGCAATCCTCATGGATGTTAA 1755 0.4809 MMPPEQESNIAPNIISPVIANRTGGGGGAEPVEGSNNNKVKPSLDDNNNNSNNDASIHEHQHHHQHQPTRTTTAEITTPPPRFFSILQQSLRPITLKFEDVSYTITYPRQNKNNGCFVPQEPKHRRKILTGVTGVARPGELTAMLGPSGSGKTTLLTALAGRLAGKVTGSITYNGRHDTAAVKRKIGFVSQDDVLYPHLTVQETLNYAAMLRLPKTLTKEEKLQHADAIVAELGLTRCRNSPVGGGVSIIRGISGGERKRVSIGLEMLINPSLLFLDEPTSGLDSTTAQMIVSVVRGLARGGRTVVTTIHQPSSRLYRMFDKVVVLSDGHPIYSGRSGRVMEYLESVGFVPAFNFVNPADFLLDLANGIVADVKHDDNVEYHEDQASVKQSLISSYKKNLYPALKEEIQRNNIDSVTSSGTPRSSDNQWNTTWWEQLKVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDHSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYHLSSYYVARMLGDLPMELVLPTIFVSISYWMGGLKPSVVTFVLTXXXVPRNWPSTRRNPHGC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121874g00001 584 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 50 566 - -
Stsc121874g00001 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 346 IPR027417 -
Stsc121874g00001 584 CDD ABCG_EPDR 93 335 - -
Stsc121874g00001 584 MobiDBLite consensus disorder prediction 1 81 - -
Stsc121874g00001 584 FunFam ABC transporter G family member 22 116 347 - -
Stsc121874g00001 584 Gene3D - 88 348 IPR027417 -
Stsc121874g00001 584 Pfam ABC-2 type transporter 435 564 IPR013525 GO:0016020|GO:0140359
Stsc121874g00001 584 ProSitePatterns ABC transporters family signature. 253 267 IPR017871 GO:0005524|GO:0016887
Stsc121874g00001 584 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 96 353 IPR003439 GO:0005524
Stsc121874g00001 584 SMART AAA_5 138 330 IPR003593 GO:0016887
Stsc121874g00001 584 MobiDBLite consensus disorder prediction 36 55 - -
Stsc121874g00001 584 Pfam ABC transporter 132 281 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121874g00001 Stsc-Chr121874 11707 16389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121874g00001 136 335 Calmodulin-binding Proteins AT2G36910 25.243 2.11e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121874g00001 K05681 - gmx:100783696 807.749