Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121870g00002 ATGGGTTCGGTTCCTGCAGAACTGAGCTTACAAATTAGAACACCAGAGGCAGCGCCACCGCCACCACCGCCACCATCAGCACGGAGTTTCATTCCTAAAACCATAACTGATTTCATCTCCGGTCTTTCAACATCGGAAACCACCGCATCTGAGAAGCAATCCACGATCAACGATTTCCTCTCTCACTTGGAAGATGAATACAACAAGATCCACGCCTTCAAGCGCGAGCTCCCTCTCTCCATGCTCCTCCTCGGCGATGCAATTGTGGAACTGAAGGAGCAATTGGCGAAATGCAGTGAAGGTGCGTGTAAATCTCATCAGCCAGTGCTGGAAGAGTTCATTCCGTTGAAGAAAGAGTTCGATCATAGCGAAGACGATGAAGAACATGTTAATAATGATAATAACAATAACAATAATCGGAAGGAGAAAGAATGCAGAGATAAGAAGAGTTGGTTGAGTTCCGTTCAGCTCTGGAACACTTCTTCTTCAATCACACTTAACAATAACAGCAACAACAACAACAATGACAATAATAATGCCTTTGATAATAATCACAAACACCATCACCAAAATCATCATCATCATCATCATAAATTCGGAACAAAGAAGAATCAGGAATGTGTAGTTGAGGATCCTTTTCAATCTCGAAGCTATGTTAGAAATAATGGAGGAAGAGGGTTTATGCCTTTTACTTCATACTCTTCTTGTTCAGTGCCAGTGACCACTGTGGCGCTCTCTGCATCGAAAGAAGAGAAGGAAGATATTGGTGCTATTAATAGGCTTCCTCTGTTGACCCCTGCTGCTGGTGTTGGTGGAGCCAAGACTCTTAGGGAAGGTTCTGGTTCCAGTGGATCCAGAACCAGCTCCAACAACAGGCCAGTTTCTTCGTCTTCTCCTCCGGCAGCCGCCGTGCACCGCACTGCCATGATGCCTCTTCAGCCTCAGCAGACAGCTAGGAAGCAGAGGAGGTGCTGGTCCCCGGAGCTGCACAGGAGATTTGTCAATGCGTTGCAGAAGCTTGGTGGTTCTCAAGTGGCAACACCAAAGCAGATAAGAGAACTCATGCAGGTTGATGGACTCACCAACGATGAAGTGAAAAGCCATTTACAAAAATACCGGCTTCATACAAGAAGAGTTCCATCTGGAAGTGGTAACCATAATCATAATCAATCTGTGGTAGTTCTTGGAGGATTGTGGATGTCACAAGGACAAGATCAGTGTAATGAATCATCAAAGGGGAGTAGCTCTGGTTCGGGTTCACCGCAGAGCCCCCTACATTTAGCCACCGGATCCCGGGGAGGAATGTCCCCAACTGAGGGTGACGACAGCATGGAAGACGATGAAGATGAAAAATCAGAGAGCTATAGCTGGAAAAGCCACACTCATCACAAACAAGTAAAAGTTGTTGATGTATAG 1416 0.459 MGSVPAELSLQIRTPEAAPPPPPPPSARSFIPKTITDFISGLSTSETTASEKQSTINDFLSHLEDEYNKIHAFKRELPLSMLLLGDAIVELKEQLAKCSEGACKSHQPVLEEFIPLKKEFDHSEDDEEHVNNDNNNNNNRKEKECRDKKSWLSSVQLWNTSSSITLNNNSNNNNNDNNNAFDNNHKHHHQNHHHHHHKFGTKKNQECVVEDPFQSRSYVRNNGGRGFMPFTSYSSCSVPVTTVALSASKEEKEDIGAINRLPLLTPAAGVGGAKTLREGSGSSGSRTSSNNRPVSSSSPPAAAVHRTAMMPLQPQQTARKQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPSGSGNHNHNQSVVVLGGLWMSQGQDQCNESSKGSSSGSGSPQSPLHLATGSRGGMSPTEGDDSMEDDEDEKSESYSWKSHTHHKQVKVVDV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 163 180 - -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 403 429 - -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 186 200 - -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 269 302 - -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 122 148 - -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 403 471 - -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 1 29 - -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 278 302 - -
Stsc121870g00002 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 317 377 IPR017930 -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 163 200 - -
Stsc121870g00002 471 Pfam Myb-like DNA-binding domain 322 373 IPR001005 -
Stsc121870g00002 471 Gene3D - 319 377 - -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 15 29 - -
Stsc121870g00002 471 SUPERFAMILY Homeodomain-like 317 378 IPR009057 -
Stsc121870g00002 471 MobiDBLite consensus disorder prediction 451 471 - -
Stsc121870g00002 471 NCBIfam myb-like DNA-binding domain, SHAQKYF class 320 375 IPR006447 GO:0003677
Stsc121870g00002 471 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 36 459 IPR044787 GO:0003700|GO:0006355
Stsc121870g00002 471 FunFam Myb family transcription factor 319 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121870g00002 Stsc-Chr121870 10149 13275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121870g00002 317 405 G2-like Transcription Factor Family AT1G68670 70.526 6.19e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc121870g00002 Myb_DNA-binding 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121870g00002 - - adu:107470076 637.491