Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121869g00002 ATGGGGGGTCATGAGAATGCAATGGGGTTTCATCATGGAAATGAGAACATTCTGACAAACAATGTTAATGTCTCAGAAATGGCTATGAGTTCTTCTTTGTCATTGGCTAAGTCTGCTTCTTCTTCAGATGTTGTTGTACCTAATAATAACCACCACCCTTTTCTTGCTGCTTCAACTTCTTGGGATCCAATTGTTTCCTTAAGCCAATCTCAAACTTTTGGAGGGTCATCAATGGTTACTACTCACAATAGTGATTTTGGAAATTCTTCATCATACCCGTTTGTTCAATATATGTCTGACTCAACAAATCTTGAGGGCATTATGGTCCATAAAATGCCATCTTTTGGGAGTGGAAACTTCTCAGAAATTGTTGGATCCTTTGGTCAAGAAGGGTCTTCTGATATAGTTAATATGAGCTATAGACCAAGTTATAATCATGGCAATGATGCCGGAACTGAAAGAGCTCCGATGAATGAACAATCTCAGGTTGAGGACTCAATTTCTGAAGAGGGTGCACCAGGAATTGCACCTAGTGGAAATCGAAGAAAGCGCTTGCTTGATCGTGATTCTTCTTTCAGTCCAAACAAGAATGCTGATGGTGATGAACTGAAAGACTCTCCAAGGAAGATCTCCGATGGTGCTAAAGAACACGAAAAGAAGGCGAAAGTCGACCAGAATGTGAGTGCGGATTTGCGTGGCAAGCAACCAGCAAAGCAATCAAAAGAAAATTCTCCAAGTGGAGAAGCTCCAAAAGAAAATTTCATTCATGTTAGAGCAAGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGAAGAGAAAAGATTAGTGAGAGAATGAGATTGCTTCAAGAACTTGTTCCGGGCTGCAACAAGATAACTGGCAAGGCAGTAATGCTTGATGAGATTATAAACTATGTGCAGTCTCTGCAGCAACAAGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCGGAACTGAATTTCGACGTAGAGCGGATCCTATCGAAGGAAATTCTTCAATCGCGCTTAGGACATGGAATTGCTGGATATGGTGTTGGTATCAGCTCCTCTCACCCATTCTCCAATGGAAGCTTTCAAGGAAACATGGCTGGCATGCCTAGTTCATCAACACAATTCCCTCCTTTGCCTCAGGCTGTTTTGGATCATGAGTTCCACAATCTTTATGGAATGGGGTATGATCCTAATACAACACTTGACAATTTGGGACCAAATGGAAGATTGAAAACAGAACTATAG 1272 0.4159 MGGHENAMGFHHGNENILTNNVNVSEMAMSSSLSLAKSASSSDVVVPNNNHHPFLAASTSWDPIVSLSQSQTFGGSSMVTTHNSDFGNSSSYPFVQYMSDSTNLEGIMVHKMPSFGSGNFSEIVGSFGQEGSSDIVNMSYRPSYNHGNDAGTERAPMNEQSQVEDSISEEGAPGIAPSGNRRKRLLDRDSSFSPNKNADGDELKDSPRKISDGAKEHEKKAKVDQNVSADLRGKQPAKQSKENSPSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKEILQSRLGHGIAGYGVGISSSHPFSNGSFQGNMAGMPSSSTQFPPLPQAVLDHEFHNLYGMGYDPNTTLDNLGPNGRLKTEL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121869g00002 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 331 IPR036638 GO:0046983
Stsc121869g00002 423 CDD bHLH_AtBPE_like 253 338 - -
Stsc121869g00002 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 313 IPR011598 GO:0046983
Stsc121869g00002 423 MobiDBLite consensus disorder prediction 181 227 - -
Stsc121869g00002 423 MobiDBLite consensus disorder prediction 138 251 - -
Stsc121869g00002 423 Pfam Helix-loop-helix DNA-binding domain 266 314 IPR011598 GO:0046983
Stsc121869g00002 423 SMART finulus 269 319 IPR011598 GO:0046983
Stsc121869g00002 423 Gene3D - 260 334 IPR036638 GO:0046983
Stsc121869g00002 423 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 156 371 IPR024097 GO:0006355
Stsc121869g00002 423 FunFam Basic helix-loop-helix transcription factor 260 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121869g00002 Stsc-Chr121869 6332 9810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121869g00002 1 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.494 9.12e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121869g00002 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121869g00002 - - gmx:100794464 536.184