Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121858g00003 ATGGAAAACGACGACGTTCATATGCTCGGCGCCGACAACACCGAAGCTGACTTGGACGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGGGAGATGCAGGCCAAGGTTGCCAAGGAAATGGGATCTATGCAAGATCCTGCTACTGCTGGTGCAAGTCAGAGCAATAGAGAGGAAGTAGATGCTCGGTCAGTCTTTGTAGGCAACGTGGACTATTCATGTACTCCCGAAGAAGTGCAGCAACATTTCCATTCATGTGGAACAGTAAACCGTGTGACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGCTATGCATATGTAGAGTTTCTTGAAGTTGAGGCAGTTCAAGAGGCTCTTCTGCTGAATGAATCTGAACTGCATGGGCGCCAATTGAAGGTGACTGCAAAGAGGACCAACATACCAGGGATGAAGCAGCATCGACCCCGGCGGACCAATCCTTACGTGGGGTTTCGAGGCAGACCTCCATATGCACCTCCTTTTGCCTTTGCCCCATATGGATACGGAAAGCTTCCAAGGTACAGGATGGCAATGCGCTACAGCCCCTACTATTGA 591 0.5025 MENDDVHMLGADNTEADLDDMKKRLKEMEDEAAALREMQAKVAKEMGSMQDPATAGASQSNREEVDARSVFVGNVDYSCTPEEVQQHFHSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQHRPRRTNPYVGFRGRPPYAPPFAFAPYGYGKLPRYRMAMRYSPYY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121858g00003 196 SUPERFAMILY RNA-binding domain, RBD 56 167 IPR035979 GO:0003676
Stsc121858g00003 196 CDD RRM_II_PABPs 69 140 - -
Stsc121858g00003 196 Gene3D - 6 141 IPR012677 -
Stsc121858g00003 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 157 - -
Stsc121858g00003 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Stsc121858g00003 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Stsc121858g00003 196 MobiDBLite consensus disorder prediction 43 65 - -
Stsc121858g00003 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Stsc121858g00003 196 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121858g00003 Stsc-Chr121858 14303 16668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121858g00003 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 1.29e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121858g00003 K14396 - mnt:21400190 317.775