Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121858g00002 ATGGCTTCCCTTCAACATCAACCTCTTCCATCACATGCTCCTACCACTGATGACCAAACTAATGATATCATAGAGATTATTAATGTTGATGAGGCCAACACAGTAGGAGTGGTCATGGAAGCTTTGAACATTTCAAGAAACAGCAGCATTGGGATTGGGACACAAGAGGTTCCAACATACATGACATGGAAGGATCTATGGGTTACAGCTTGGGTGAGCAAGAATGAGAGCAAACCGATCCTTGAGGGTCTTACTGGTTATGCCAAGCCAGGGCAGCTTTTGGCCATAATGGGTCCTTCTGGCTCTGGCAAGTCTACACTTCTTGATGCTTTGGGTGGGAGATTAAGTTCAAACACAAGACAAATAGGGGAGATTCTTATCAATGGTCATAAGCAATCGTTGGCCTATGGAACCGCGGCATATGTGACACAAGATGATACCTTAATAACATCATTAACAGTGAGAGAAGCAGTGTACTATTCAGCTCAGCTTCAGTTACCTGATTCAATGTCAAAGGCAGAGAAGAAACAGAGAGCAGACTTCACAATAAGAGAGATGGGTTTGCAAGATGCCATCAACACTAGAATTGGTGGCTGGGGTTGCAAAGGAATCAGCGGTGGTCAGAAGAGGCGTGTCAGCATCTGCATTGAGATCCTAACACGCCCAACACTCTTGTTTCTTGATGAACCAACCAGTGGACTTGACAGTGCTGCCTCCTATTATGTCATGAAAAGAATTAAATCCCAGCTGGATCATAAAGATGGAAGAACAGTCTACTTTGGACCTGCTTCTGCTGCAATTCAGTTTTTTGCTTCCAATGGTTTTCCTTGTCCTGCTCTTCAAAACCCCTCAGATCATATGTTAAAAACTATAAACAAGGACTTCGATCAGGAAAATGAGGTGGCTCCTGATGGTGGGACTGGAACCATACCTACTGAAGAAGTAATTCGGATTCTTGTAAACTCATATAACTCATCTGAGATGCACCAACAAGTTGAAGCTGAAGTAGCAATGCTTTCTGAAACGGAAACTATTTTCCAAGACAAGAAGAGAAGTCATGCTGGGTTTCTTAGTCAATGCATTGTTCTGACCAAAAGATCATTCGTAAACATGTTTCGTGATTTAGGGTATTACTGGATACGCCTTGTCGCATATATTGGGATGGCTATTTGTTTAGGAACTGTCTTCTATAATGTTGACACTAGCTATAGATCAATTAAGGACAGAGGGTCATTTCTTACATTTGTGTCTACATTCTTGACTTTCATGAGCATTGGTGGATTCCCTTCCTTTGTAGAAGACATGAAGGTATTTGAACGAGAAAGGCTAAATGGGCATTATGGTGTGTGCGCCTTTGTGATTGGGAACACGGTATCAGGTCTGCCATTGGTGTTACTAGTTTCATTGATTCCAGGAACAATGGCATATTACCTAGCTGGTCTTCAAAATGGGTACGAGCAAGTTCTATACTTCTTGTGCGTGTTGTTCACTTGTGTTATGTTAGTGGAAAGCCTCATGATGATCATTGCAGCCATGGTCCCAAACTACCTGTTAGGAATCATTATAGGTTCTGCAATCCAAGGGCTCATGATTCTGCTTGCTGGGTTCTTTAAATTGCCGAATGATATTCCTAAGCCACTTTGGAAATACCCCTTGCACTACATGGCTTTCCATCGATATGCCTTCCAAGGCTTGTTCAAGAACGAATTCCAAGGCCTAAAGTTTGCTACCAATAATAAGAGTAACAAGTTTATTAGTGGTGAGAAGATTCTTAGGAATGTATTTGAAGTAGACAACCATTACTCAAAGTGGGTTGATCTTTCAGTGTTGGTGGGGATGCTTGTTCTGTATCGAGTTCTATTTTTTGTTACCATTAAAGCTAGGGAGAATGTTAAGCCTTTTGTTGCATCCTTCGAATTGGTGTCTCCCAAGAAAACAATTCATGTCATGGAACATCCAAACAACACCCCTCCTAATAATACCCATGGACATGGACACTACCTTGTATAA 2010 0.4174 MASLQHQPLPSHAPTTDDQTNDIIEIINVDEANTVGVVMEALNISRNSSIGIGTQEVPTYMTWKDLWVTAWVSKNESKPILEGLTGYAKPGQLLAIMGPSGSGKSTLLDALGGRLSSNTRQIGEILINGHKQSLAYGTAAYVTQDDTLITSLTVREAVYYSAQLQLPDSMSKAEKKQRADFTIREMGLQDAINTRIGGWGCKGISGGQKRRVSICIEILTRPTLLFLDEPTSGLDSAASYYVMKRIKSQLDHKDGRTVYFGPASAAIQFFASNGFPCPALQNPSDHMLKTINKDFDQENEVAPDGGTGTIPTEEVIRILVNSYNSSEMHQQVEAEVAMLSETETIFQDKKRSHAGFLSQCIVLTKRSFVNMFRDLGYYWIRLVAYIGMAICLGTVFYNVDTSYRSIKDRGSFLTFVSTFLTFMSIGGFPSFVEDMKVFERERLNGHYGVCAFVIGNTVSGLPLVLLVSLIPGTMAYYLAGLQNGYEQVLYFLCVLFTCVMLVESLMMIIAAMVPNYLLGIIIGSAIQGLMILLAGFFKLPNDIPKPLWKYPLHYMAFHRYAFQGLFKNEFQGLKFATNNKSNKFISGEKILRNVFEVDNHYSKWVDLSVLVGMLVLYRVLFFVTIKARENVKPFVASFELVSPKKTIHVMEHPNNTPPNNTHGHGHYLV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121858g00002 669 SMART AAA_5 90 292 IPR003593 GO:0016887
Stsc121858g00002 669 MobiDBLite consensus disorder prediction 1 20 - -
Stsc121858g00002 669 Gene3D - 63 261 IPR027417 -
Stsc121858g00002 669 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 254 639 - -
Stsc121858g00002 669 Pfam ABC-2 type transporter 359 570 IPR013525 GO:0016020|GO:0140359
Stsc121858g00002 669 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 61 317 IPR003439 GO:0005524
Stsc121858g00002 669 Pfam ABC transporter 83 232 IPR003439 GO:0005524
Stsc121858g00002 669 ProSitePatterns ABC transporters family signature. 204 218 IPR017871 GO:0005524|GO:0016887
Stsc121858g00002 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 258 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121858g00002 Stsc-Chr121858 1359 5312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121858g00002 77 257 Calmodulin-binding Proteins AT2G36910 26.562 2.48e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121858g00002 K05681 - gmx:100813462 853.973