Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121846g00001 ATGCTGAGTTTCTCAACAACACCATCACAAAAGTCAGAGACTTTGATTGTGGAGAAGGCTTCCTCAAATGCTACATTGCAATCTTCTTACCACCCTTTGTCTAGTTACACCATAAATAATGCAGGTAACAATAACAGCAATTGGGGAATGAACATGAACATGATGATGATGGGTAATAATAATGTGGGAAGAGTTTTAGGAGCTGCATTATTCACTCCCTCACAGTGGATGGAATTGGAGCATCAAGCACTGATTTACAAGTATATCACTGCAAATGTTCCTGTTCCTTCTCATCTTCTAATACCAATCAGAAAAGCCCTTGATTCCACTTCTGCATTCTGTAACTTTCCTAATGCACTTCTTAGACCCAATGCATTGGGATGGGGAGGTTTCCATCTGGGATTCTCCGGCAGCACCGATCCGGAGCCGGGTCGGTGCAGGAGAACCGATGGGAAGAAATGGCGGTGCTCGAGGGACGCGGTTGTGGACCAGAAGTACTGCGAGCGTCACATGAACCGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCAGCTGCACTCACCACCACCACCACCGCAACTGCAACCGCAACCACCACTTGTAACTCAAAGCTATTGTTGCCTAACAGTAACAACAATTCATGTTCTTCATTCTCCATTGTGGGAAACACTACTGCTTCCAACAACAACAGCAACACTATTTCATTTGGAAACTGCCATGAACACAAGAATATTATTATGCAGCAGCAGCAGCCTCTTGCATCTCATGATTCTGCTGCCAATAACATCAGCAGGATGTTTATGAAGAAAGAGAACAATAATGGAAATGAGAGTTCATCACTACTTGCAATGCTACCACCAAACCTTGATCTCAAAGCAAAGGAAAACCCATTCATGATTCACAACAACAACAACCATGAATTTGGACTCTTGAGTTGTGATTCACTCCTTAACCCTTCTTGCAATGACAAGACCAATGACTCACAAAACCATTCCCTAAGGCATTTCATTGATGAGTCTTCAACACAATTGTCAATTTCAATCCCAAATCATCATCAATTCATGCCAACCAATGATGAGAAAGTGATGACACTTTCACCTTTGAGGGTATCATCATCAAGGGAATTGGAACTGGAATTAGTAGATCCTATTCAAATGGGGTTAGGAGTTGGAATTGGTGTCAACGACATTGTTAGACAACCAAATTGGATTCCAATTTCTTGGGAGGGTGGTCCACTTGGTGAGGCTCTCAACCTTAGCAATAATAATAATAAGGGCTCTTTGAACCTTATTAGTAGTGATGGTTGGGATAATAGTCCTTCAATAGGGTCATCACCAACTGGGGTGTTGCAAAAGACAACAGCATTTGGTTCTCTCTCTAATAGCAGTGCTGGGAGTAGTCCAAGGGCAGAGAACAACAACAATGGAGGGGCAATCTTGTAA 1458 0.4321 MLSFSTTPSQKSETLIVEKASSNATLQSSYHPLSSYTINNAGNNNSNWGMNMNMMMMGNNNVGRVLGAALFTPSQWMELEHQALIYKYITANVPVPSHLLIPIRKALDSTSAFCNFPNALLRPNALGWGGFHLGFSGSTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAAALTTTTTATATATTTCNSKLLLPNSNNNSCSSFSIVGNTTASNNNSNTISFGNCHEHKNIIMQQQQPLASHDSAANNISRMFMKKENNNGNESSSLLAMLPPNLDLKAKENPFMIHNNNNHEFGLLSCDSLLNPSCNDKTNDSQNHSLRHFIDESSTQLSISIPNHHQFMPTNDEKVMTLSPLRVSSSRELELELVDPIQMGLGVGIGVNDIVRQPNWIPISWEGGPLGEALNLSNNNNKGSLNLISSDGWDNSPSIGSSPTGVLQKTTAFGSLSNSSAGSSPRAENNNNGGAIL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121846g00001 485 PANTHER GROWTH-REGULATING FACTOR 5 47 357 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc121846g00001 485 SMART QLQ_2 69 105 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc121846g00001 485 MobiDBLite consensus disorder prediction 462 485 - -
Stsc121846g00001 485 MobiDBLite consensus disorder prediction 170 196 - -
Stsc121846g00001 485 ProSiteProfiles QLQ domain profile. 70 105 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc121846g00001 485 Pfam QLQ 71 104 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc121846g00001 485 Pfam WRC 141 183 IPR014977 -
Stsc121846g00001 485 ProSiteProfiles WRC domain profile. 140 184 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121846g00001 Stsc-Chr121846 16875 20945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121846g00001 47 462 GRF Transcription Factor Family AT2G22840 42.188 5.34e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Stsc121846g00001 WRC 4.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121846g00001 - - aip:107605578 711.449