Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121843g00004 ATGCAGAAATCAGGCTATGGCTCCGACGGAATATACAGGTCACTCAGACCTTCACTCCATCTTCCTAACAATCCAAACCTCTCCCTCGTCACACACCTCTTCTCCAACGTTTCCTCCTTCCCCAACAAACCTGCTCTCTTCGACGCCGATACTTCCCAATCCCTCACTTTCTCCGACTTCAAGTCTCTTGCCGTTAAAGTCTCCCACGGCCTCCAACGACTCGGAATATCCAAAAACGACGTCGTTCTCTTCTTCTCCCCAAACACCATCTACTACCCCGTCTGCTTCCTCGCCGTCACCACCCTCGGCGCCATCGCCTCCACCGTCAACCCCTCCTACACCGCCTCCGAAGTCTCCAAACAAATTAAAGACTGCAACCCCAAGCTCATCTTAACCGTCACAGACCTATGGGACAAACTCAAGACCTTCAATCTCCCCGCAGTCTTCCTCGATTCGAATCCCACCGTCCACGTGTCACCATCGCAACGGTCCTCCAAGATCACGAGCTTCCACGATCTGGTCAAACTCGCCGGTACCGAAACAGAGTTTCCAAATACCAACGTGAAGCAGAGCGACACGGCGGCGCTGCTGTACTCGTCGGGAACAACGGGGCTAAGCAAGGGCGTGGTTCTGACACACCGGAACTTCATAGCGGCGGCGAAGATGATATCCATGGACGACGAGATGGCAGGGGAGATGCACAACGTGTTCCTATGCGTGCTGCCAATGTTCCACGTGTTCGGGCTGGCGTTGATACTGTACTCTCAGCTGCAGCGTGGGAACGCCGTGGTGTGCTTGAAGAGGTTCGAGTTGAATGCGTTGTTAAGTAGCATTGAAAAGTACAAGGTAACGCACTTATGGATAGTGCCTCCCATCGTTCTTGCTCTAGCCAAACACGCCCTTGTTGACAAGTTTGACCTCTCCTCGTTACGCCACATCGGTTCCGGTGCTGCTCCTCTCGGCAAAGAACTCATGCAGGACTGTTCTAAGCGTTTCCCTCATGCTATCGTCATGCAGGGATATGGTTTGACAGAGACTTGTGGGATTGTTTCCATGGAGAATGCGAGGGTAGGAGTGAGGAATAGTGGGTCAGCGGGGATGCTTTTTGCTGGAGTGGAAGCTCGAATAGTTAGTGTTGACACCCTGAAGCCTCAACCTCCTTCAAAGATGGGCGAGATTTGGGTGCGAGGTCCTAACATGATGCAAGGTTATCATAACAATCCAAGGGCCACAGAATTGACCATAGATAAACAAGGATGGGTACATACAGGAGATCTTGGATATTTTGATGAAGAGGGGCATCTTTTTGTTGTTGATCGCATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCTCCAGCAGAGCTAGAAGGCCTTCTTGTTTCTCACCCAGAAATACTTGATGCTGTTGTCATCCCTTATCCTGATGCTGAGGCTGGTGAGGTTCCTGTTGCCTATGTTGTTCGTTCATCCAACAGTTCACTCACTGAAGAAGATGTTATCAAGTTTATTGCTGATCAAGTTGCACCTTTCAAACGATTGAAAAGGGTGACATTCATCAACGTTGTTCCCAAGACAGCATCTGGAAAAATTCTCAGAAGAGAGCTTATTGATAAAGCAAGATCCAAAATATAA 1638 0.4951 MQKSGYGSDGIYRSLRPSLHLPNNPNLSLVTHLFSNVSSFPNKPALFDADTSQSLTFSDFKSLAVKVSHGLQRLGISKNDVVLFFSPNTIYYPVCFLAVTTLGAIASTVNPSYTASEVSKQIKDCNPKLILTVTDLWDKLKTFNLPAVFLDSNPTVHVSPSQRSSKITSFHDLVKLAGTETEFPNTNVKQSDTAALLYSSGTTGLSKGVVLTHRNFIAAAKMISMDDEMAGEMHNVFLCVLPMFHVFGLALILYSQLQRGNAVVCLKRFELNALLSSIEKYKVTHLWIVPPIVLALAKHALVDKFDLSSLRHIGSGAAPLGKELMQDCSKRFPHAIVMQGYGLTETCGIVSMENARVGVRNSGSAGMLFAGVEARIVSVDTLKPQPPSKMGEIWVRGPNMMQGYHNNPRATELTIDKQGWVHTGDLGYFDEEGHLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSSNSSLTEEDVIKFIADQVAPFKRLKRVTFINVVPKTASGKILRRELIDKARSKI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121843g00004 545 ProSitePatterns EF-hand calcium-binding domain. 48 60 IPR018247 -
Stsc121843g00004 545 Gene3D - 443 544 IPR045851 -
Stsc121843g00004 545 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Stsc121843g00004 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 540 - -
Stsc121843g00004 545 SUPERFAMILY Acetyl-CoA synthetase-like 20 543 - -
Stsc121843g00004 545 CDD 4CL 21 537 - -
Stsc121843g00004 545 Gene3D - 9 442 IPR042099 -
Stsc121843g00004 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Stsc121843g00004 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 442 - -
Stsc121843g00004 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Stsc121843g00004 545 Pfam AMP-binding enzyme 36 447 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121843g00004 Stsc-Chr121843 14329 16891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121843g00004 1 545 Monolignol Biosynthesis Gene Families AT4G05160 66.606 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121843g00004 K01904 - gmx:100797843 817.379