Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121843g00003 ATGGGAAGAGCTCCTTGCTGTGATAAGGCAAGTGTGAAGAGAGGGCCATGGTCACCTGAAGAAGACACTAAGCTCAAAGACTATATAGAGAAGCATGGAACTGGAGGAAACTGGATTGCTCTTCCTCACAAAGCTGGTCTAAAGAGGTGTGGAAAAAGCTGTAGATTGAGATGGCTTAACTATTTGAGGCCTAACATCAAGCATGGAGAATTCTCAGATGAGGAAGACAGAATCATCTGCACCCTTTATGCTAATATTGGAAGCAGATGGTCAATTATAGCAGCACAGTTACCAGGAAGGACTGACAATGATATAAAGAACTATTGGAACACCAAGCTCAAGAAGAAGCTCATGGCTTTGCTTCCTCATCATCATAACCCACCATCATCATCATCTTTCTTTCCCTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCTTCACACAACAGATAATAATCATCAATATTACTATTACAACACTAGTAGTGCTGCTGCTACTACTATTCCACCAACCATGTCTTTCACTGCTGTTCCTCCTCCTCCTTCAACTACTACTAGTTATTATTATAATTACACTACTACTACTGCTGCTGCTGCAGCATCACCAATAATGTCTCTCCCTTTCTACCAAAACCAAGAACAAGAGCCATTGTTGATAAGCCCCATGCAACTTCAACAGTATTACCCTATGTTTGGGAGTGAAGGAAGCTGCAGCTCATCTGATGGAAGCTGTAGCTATGGTGGGAAGGAGATTAAGAAAGAAGAAATGACGATGGGGTTTCATCATCATGAAGAAGAGGGTATGATGGGTTGTGAGGGAGAAGAAGGCATTAACCAGTGGACAGAGAAGCTAGACAAGTGGTTGGGGGGAAACCCATTGGACTATGATTTGGAGGTGATTAAACAACTTGTTATTAGCAGCAGCAATGGCAATGGCAATGATGGGTTGTTCAGTGTTGATGAAAACAAGACACAAGAAGGGATGATCAAGTCCATCTACAAAGTACTCTGA 1029 0.4198 MGRAPCCDKASVKRGPWSPEEDTKLKDYIEKHGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALLPHHHNPPSSSSFFPYSSSSSSSSSSSSSPSLHTTDNNHQYYYYNTSSAAATTIPPTMSFTAVPPPPSTTTSYYYNYTTTTAAAAASPIMSLPFYQNQEQEPLLISPMQLQQYYPMFGSEGSCSSSDGSCSYGGKEIKKEEMTMGFHHHEEEGMMGCEGEEGINQWTEKLDKWLGGNPLDYDLEVIKQLVISSSNGNGNDGLFSVDENKTQEGMIKSIYKVL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121843g00003 342 CDD SANT 70 111 IPR001005 -
Stsc121843g00003 342 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc121843g00003 342 PANTHER OS09G0431300 PROTEIN 1 289 - -
Stsc121843g00003 342 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc121843g00003 342 Gene3D - 7 68 - -
Stsc121843g00003 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc121843g00003 342 SMART sant 67 115 IPR001005 -
Stsc121843g00003 342 SMART sant 13 64 IPR001005 -
Stsc121843g00003 342 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc121843g00003 342 CDD SANT 16 62 IPR001005 -
Stsc121843g00003 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc121843g00003 342 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc121843g00003 342 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc121843g00003 342 FunFam Transcription factor RAX3 7 68 - -
Stsc121843g00003 342 Gene3D - 69 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121843g00003 Stsc-Chr121843 8389 10006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121843g00003 1 125 MYB Transcription Factor Family AT2G36890 82.812 1.76e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121843g00003 Myb_DNA-binding 7.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121843g00003 K09422 - gmx:100796382 329.717